Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G442200.1 | Wheat | nucleus | 66.48 | 63.6 |
| KXG33813 | Sorghum | nucleus | 65.03 | 62.15 |
| TraesCS3A01G408500.1 | Wheat | nucleus | 64.85 | 62.09 |
| TraesCS3D01G403600.1 | Wheat | nucleus | 68.85 | 61.73 |
| Os03t0722400-01 | Rice | cytosol | 18.89 | 24.5 |
| Os09t0442700-01 | Rice | cytosol | 18.62 | 24.26 |
| Os04t0566100-00 | Rice | cytosol | 16.44 | 20.97 |
| Os05t0144300-01 | Rice | nucleus | 19.98 | 19.5 |
| Os01t0367900-01 | Rice | nucleus | 19.53 | 19.42 |
| Os05t0150300-01 | Rice | nucleus | 19.98 | 19.0 |
| Os03t0352500-01 | Rice | nucleus | 3.0 | 15.42 |
| Os07t0660200-01 | Rice | nucleus | 8.72 | 15.21 |
| Os07t0497100-01 | Rice | nucleus | 21.89 | 10.67 |
| Os02t0689800-01 | Rice | nucleus | 7.81 | 8.07 |
| Os03t0352450-00 | Rice | nucleus | 2.0 | 4.79 |
| Os02t0114033-00 | Rice | nucleus | 3.0 | 3.82 |
| Os06t0255200-02 | Rice | cytosol, nucleus, plastid | 1.36 | 2.3 |
| Os02t0114000-01 | Rice | cytosol, nucleus | 0.54 | 1.03 |
| Os06t0183800-01 | Rice | cytosol, nucleus | 0.18 | 0.45 |
Protein Annotations
| Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0P0VBB9 |
| ProteinID:BAS75560.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
| InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | EnsemblPlantsGene:Os01g0881000 |
| EnsemblPlants:Os01t0881000-00 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | ScanProsite:PS00690 |
| ScanProsite:PS01359 | PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF855 | SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | UniParc:UPI00039394DC | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
CHD-related gene 703SNF2-related domain containing protein. (Os01t0881000-00)
Coordinates
chr1:-:38228812..38237228
Molecular Weight (calculated)
124195.0 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.555
Length
1101 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPPARGGRRG RGRGRRGGRG GAASRARGEN VVDVEPIKLG DDDAKVDPQT KSPNEEITSA EVCEVETSEA SPLGAPEEDE GKPGSTRNLK RLRKTITIDS
0101: AAAEEHGAES DDEEFDVLAT ASCQELAPCR RSKRLRCKPT RKRSKPTGKR DLGGKESEDD VFANSSSSSQ DDAGKLASRR SKRLRERLTS DYFDDENCSA
0201: PRRGSKRLRN RLGPRNISYA DDDSDTDDNR KKIVPCRRTS KRLQEKRKAH DVSEESYTEA SSCMLSTSSS SDDELLHNSI KPGRRNSGGP SCSICKIGIA
0301: CSFLIKCKNS TCSRSFHTFC LDPPLQEIIG TWECSWCKSN AAPAVKVTEV LTSKKIQRLV GHRRILQEAD FQYQFLVKWQ SLSHHHDCWV PLEWLHVSDP
0401: LRVQSYLNKN CLPKEVYSED QRKLEWFEVD HAIACRRKFH HEGLCDVLAT FQDNQDFDGY EFLVKWKGLD YCEATWEPCC TDGVQQAVSM LVRRHKNASK
0501: RVNISQTCLD GSKIEEVHCG ALYDYQLQGL QWLIDNFKTR RSVILADEMG LGKTVQVVCF LYHIIKESLT ASPALILAPK SILLQWEKEF CQWASDLNVI
0601: VYQGDRDSRK CIQVHEMYSS DGKPLFDALV TSYEFVQIDK AVLQKFKWST IVIDEAHRMK KLDCNLAACL KRYCSEFRLL LTGTPLQNNI MELFSLLHYI
0701: DPDEFSDPKA DGLFSPIESG RDLTMDEKVA RIHNILKPRM LRRMKSDVLT DSMPVKKWVE VPCALADSQR ELYINILERN YSKLNSAIRN GELSVLLFFH
0801: ALLLPRLKER GNRVLIFSQM TRMLDILEDF LCSLGYKYAR IDGQTSLSAR QESIEEYKNI DSETFIFLMS TRAGGMGVDL PGADRVIIYD PDFNPFMDLQ
0901: AQSRAHRIGQ TRPVVVYQLI TKCSVEEKIL QKSKQKLAIE NMLMNSSKKP SADELQSILL HGAKTIVDRK ISATSIHYDN EAIENLLKLD PSTGEKCSSD
1001: DNGYLGSIVS FAHGVEDEAP SSPKVEDLKV LKPATPKVDL GRGKRQRKVV NYADEVENED SDDMYAPEGS STSEFSSSSS DDETDSALQL QIVTVPDIDA
1101: D
0101: AAAEEHGAES DDEEFDVLAT ASCQELAPCR RSKRLRCKPT RKRSKPTGKR DLGGKESEDD VFANSSSSSQ DDAGKLASRR SKRLRERLTS DYFDDENCSA
0201: PRRGSKRLRN RLGPRNISYA DDDSDTDDNR KKIVPCRRTS KRLQEKRKAH DVSEESYTEA SSCMLSTSSS SDDELLHNSI KPGRRNSGGP SCSICKIGIA
0301: CSFLIKCKNS TCSRSFHTFC LDPPLQEIIG TWECSWCKSN AAPAVKVTEV LTSKKIQRLV GHRRILQEAD FQYQFLVKWQ SLSHHHDCWV PLEWLHVSDP
0401: LRVQSYLNKN CLPKEVYSED QRKLEWFEVD HAIACRRKFH HEGLCDVLAT FQDNQDFDGY EFLVKWKGLD YCEATWEPCC TDGVQQAVSM LVRRHKNASK
0501: RVNISQTCLD GSKIEEVHCG ALYDYQLQGL QWLIDNFKTR RSVILADEMG LGKTVQVVCF LYHIIKESLT ASPALILAPK SILLQWEKEF CQWASDLNVI
0601: VYQGDRDSRK CIQVHEMYSS DGKPLFDALV TSYEFVQIDK AVLQKFKWST IVIDEAHRMK KLDCNLAACL KRYCSEFRLL LTGTPLQNNI MELFSLLHYI
0701: DPDEFSDPKA DGLFSPIESG RDLTMDEKVA RIHNILKPRM LRRMKSDVLT DSMPVKKWVE VPCALADSQR ELYINILERN YSKLNSAIRN GELSVLLFFH
0801: ALLLPRLKER GNRVLIFSQM TRMLDILEDF LCSLGYKYAR IDGQTSLSAR QESIEEYKNI DSETFIFLMS TRAGGMGVDL PGADRVIIYD PDFNPFMDLQ
0901: AQSRAHRIGQ TRPVVVYQLI TKCSVEEKIL QKSKQKLAIE NMLMNSSKKP SADELQSILL HGAKTIVDRK ISATSIHYDN EAIENLLKLD PSTGEKCSSD
1001: DNGYLGSIVS FAHGVEDEAP SSPKVEDLKV LKPATPKVDL GRGKRQRKVV NYADEVENED SDDMYAPEGS STSEFSSSSS DDETDSALQL QIVTVPDIDA
1101: D
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.