Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0881000-00 | Rice | nucleus | 62.09 | 64.85 |
| KXG33813 | Sorghum | nucleus | 60.26 | 60.16 |
| TraesCS7A01G074600.1 | Wheat | cytosol | 18.35 | 28.1 |
| TraesCS2A01G368200.1 | Wheat | cytosol | 18.52 | 27.34 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 20.26 | 25.77 |
| TraesCS4A01G261000.1 | Wheat | cytosol | 18.52 | 25.42 |
| TraesCS4A01G372200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 18.52 | 24.43 |
| TraesCS2A01G403300.2 | Wheat | cytosol, nucleus | 17.74 | 23.48 |
| TraesCS1A01G091100.1 | Wheat | nucleus | 21.22 | 22.06 |
| TraesCS5A01G541400.1 | Wheat | cytosol | 16.52 | 21.54 |
| TraesCS3A01G069900.2 | Wheat | nucleus | 20.0 | 20.35 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 23.91 | 20.24 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 22.96 | 15.28 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 19.57 | 15.04 |
| TraesCS2A01G227900.1 | Wheat | nucleus | 22.61 | 11.58 |
| TraesCS6A01G034200.2 | Wheat | nucleus, plastid | 20.61 | 10.7 |
| TraesCS7A01G544700.1 | Wheat | nucleus | 19.13 | 10.2 |
| TraesCS7A01G203600.1 | Wheat | nucleus | 22.61 | 7.67 |
Protein Annotations
| Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | ScanProsite:PS00690 | ScanProsite:PS01359 | PFscan:PS50013 |
| PFscan:PS50016 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF855 |
| SMART:SM00249 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| SUPFAM:SSF54160 | EnsemblPlantsGene:TraesCS3A01G408500 | EnsemblPlants:TraesCS3A01G408500.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00024 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr3A:+:653335914..653346246
Molecular Weight (calculated)
130021.0 Da
IEP (calculated)
7.634
GRAVY (calculated)
-0.550
Length
1150 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRGGRRGTWK VRRGGGAAAA RPPPDERAAD VQVIELSDDE VKSATQTKPP EVSAKNLGRL RKRTAAGGTA TSELHEDEVQ AADVMPSNGE GGQLLPPCRR
0101: SKRLQRERTE KQELSSRESQ HDVFVNSEDE SKMLVRRRRP NHLRKRFTSE YFSGEWNEDK YISRSSSDDD DDHLPPQRRS KRLWHRMGTS KDAYNGDSDS
0201: DTVDNHRKAI PCRRMSKRLQ QKQKADHVSD ENCTKASLCM LPTSKSSGSD DELLRSTVKL CKSASSGPTC SICKSGAGSC LLIQCQNTSC SRSFHTFCLS
0301: PPMQDSRGTL ECPLCKIDQA SLAKGTEVYA LKKVQTLVGC RRVILQESDF QYQMLVKWQS LSHHHDCWVP LDWLRVFEPQ RARTYISKNT LPKEAYSEDQ
0401: RKPEWLEVDR AIACRRKFGY DGLCDVLASF DNNEDFEGHE FLVKWKGLDY CDATWESYFT EGVPSAVSML VQRHKNTVRS PMNIDVMVPE NVLYNYQVQG
0501: LQWILDNFKS RRSVILADEM GLGKTVQVVC FLNRIIKGSL TTSPALVIVP KSILLQWEKE FDRWAHDLSI VVYQGDKDSI KCIQAHELYS SKGKTLFDAL
0601: VTSYEIVQID KAVLKKIKWS TIVIDEAHRL KTLDCNLASC LLKYSSDFRL LLTGTPFQNN VLELFSLLHY IDPNEFSDPK DDLLFSPIES ERGLTIDEKI
0701: ARIPEILKPR MLRRLKADVL KDSMPTKKWV EVPCALTDSQ RDLYINILEK NYSKLNSAIQ DGRKRSLNNV LMELRKCCNH PYLFTGSDGK QHAGEDVLQS
0801: LVSASGKLQL LQKLLPKLKE RGNRVLIFSQ MTKMLDILED FLSFLGYTYA RIDGQTALSE RQESIKEYNN AESETFIFLM STRAGGIGID LPGADRVIIY
0901: DPDFNPFMDL QAQSRAHRIG QTRPVVVYQL ITKCSVEAKI LQKSKQKLAI ENILMNSSKK PPSADELKSI LLHGAKIIQD KKEIKAVSIH YDDEAIQNLL
1001: KLDPSSDEMC TSECNGYLGG IESFPHGAED VVPPSPKVEE LKVFKPATPK VDLGRGRRQR NLVKYFEETD NEDSDDMYAP EASSESSSSS SDDETDEEIP
1101: EVARARTEVD MKAETVSVVK PEVAPVPAPL PQSQSPAALP QMKRKRLSLL
0101: SKRLQRERTE KQELSSRESQ HDVFVNSEDE SKMLVRRRRP NHLRKRFTSE YFSGEWNEDK YISRSSSDDD DDHLPPQRRS KRLWHRMGTS KDAYNGDSDS
0201: DTVDNHRKAI PCRRMSKRLQ QKQKADHVSD ENCTKASLCM LPTSKSSGSD DELLRSTVKL CKSASSGPTC SICKSGAGSC LLIQCQNTSC SRSFHTFCLS
0301: PPMQDSRGTL ECPLCKIDQA SLAKGTEVYA LKKVQTLVGC RRVILQESDF QYQMLVKWQS LSHHHDCWVP LDWLRVFEPQ RARTYISKNT LPKEAYSEDQ
0401: RKPEWLEVDR AIACRRKFGY DGLCDVLASF DNNEDFEGHE FLVKWKGLDY CDATWESYFT EGVPSAVSML VQRHKNTVRS PMNIDVMVPE NVLYNYQVQG
0501: LQWILDNFKS RRSVILADEM GLGKTVQVVC FLNRIIKGSL TTSPALVIVP KSILLQWEKE FDRWAHDLSI VVYQGDKDSI KCIQAHELYS SKGKTLFDAL
0601: VTSYEIVQID KAVLKKIKWS TIVIDEAHRL KTLDCNLASC LLKYSSDFRL LLTGTPFQNN VLELFSLLHY IDPNEFSDPK DDLLFSPIES ERGLTIDEKI
0701: ARIPEILKPR MLRRLKADVL KDSMPTKKWV EVPCALTDSQ RDLYINILEK NYSKLNSAIQ DGRKRSLNNV LMELRKCCNH PYLFTGSDGK QHAGEDVLQS
0801: LVSASGKLQL LQKLLPKLKE RGNRVLIFSQ MTKMLDILED FLSFLGYTYA RIDGQTALSE RQESIKEYNN AESETFIFLM STRAGGIGID LPGADRVIIY
0901: DPDFNPFMDL QAQSRAHRIG QTRPVVVYQL ITKCSVEAKI LQKSKQKLAI ENILMNSSKK PPSADELKSI LLHGAKIIQD KKEIKAVSIH YDDEAIQNLL
1001: KLDPSSDEMC TSECNGYLGG IESFPHGAED VVPPSPKVEE LKVFKPATPK VDLGRGRRQR NLVKYFEETD NEDSDDMYAP EASSESSSSS SDDETDEEIP
1101: EVARARTEVD MKAETVSVVK PEVAPVPAPL PQSQSPAALP QMKRKRLSLL
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.