Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G089200.2 | Wheat | nucleus | 99.89 | 79.42 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 99.67 | 79.38 |
| Os05t0144300-01 | Rice | nucleus | 86.28 | 69.15 |
| Zm00001d024816_P007 | Maize | cytosol | 84.29 | 68.65 |
| Zm00001d006798_P002 | Maize | nucleus | 84.07 | 68.1 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 84.62 | 67.88 |
| Solyc01g079690.2.1 | Tomato | nucleus | 65.93 | 59.9 |
| KRH27613 | Soybean | nucleus | 67.59 | 57.48 |
| KRH35559 | Soybean | nucleus | 67.04 | 56.53 |
| KRG91253 | Soybean | nucleus | 66.81 | 56.29 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 67.7 | 55.48 |
| AT3G06010.1 | Thale cress | nucleus | 64.27 | 52.72 |
| CDY18840 | Canola | nucleus | 62.94 | 52.54 |
| Bra040237.1-P | Field mustard | nucleus | 63.16 | 51.91 |
| AT5G19310.1 | Thale cress | nucleus | 60.29 | 51.22 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 68.47 | 42.22 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 61.73 | 40.43 |
| TraesCS7A01G074600.1 | Wheat | cytosol | 26.77 | 32.22 |
| TraesCS2A01G368200.1 | Wheat | cytosol | 25.66 | 29.78 |
| TraesCS4A01G261000.1 | Wheat | cytosol | 26.66 | 28.76 |
| TraesCS4A01G372200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 26.88 | 27.87 |
| TraesCS1A01G091100.1 | Wheat | nucleus | 31.31 | 25.59 |
| TraesCS3A01G069900.2 | Wheat | nucleus | 30.64 | 24.51 |
| TraesCS2A01G403300.2 | Wheat | cytosol, nucleus | 22.79 | 23.71 |
| TraesCS5A01G541400.1 | Wheat | cytosol | 22.57 | 23.13 |
| TraesCS3A01G408500.1 | Wheat | nucleus | 25.77 | 20.26 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 27.32 | 18.18 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 30.09 | 15.74 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 26.0 | 15.71 |
| TraesCS6A01G034200.2 | Wheat | nucleus, plastid | 36.84 | 15.03 |
| TraesCS7A01G544700.1 | Wheat | nucleus | 27.65 | 11.6 |
| TraesCS2A01G227900.1 | Wheat | nucleus | 27.43 | 11.05 |
| TraesCS7A01G203600.1 | Wheat | nucleus | 36.06 | 9.62 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | EnsemblPlantsGene:TraesCS1A01G087900 |
| EnsemblPlants:TraesCS1A01G087900.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:-:75715901..75722755
Molecular Weight (calculated)
104276.0 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.698
Length
904 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRIRYPFTM YGIGDGFSMD TDDIHRKKRF TERISKLEEE EKNQAETRKR RFFTEILNAA REYQVQTSAT YKRRKQRNDG VQAWHVRARQ RINRLEKSRL
101: QVLKAGDQEA YMRMVEESKN ERLTMLLDKT NELLEGIGKA VQRQKDAEHV SRPEGSEDSE SDESPEESPS DDDADTHGSA NTSKFNAAGR RLDSTVHSIE
201: EKVTEQPSAL VGGELRPYQL EGLQWMLSLF NNNLNGILAD EMGLGKTIQT IALIAYLLEK KEVTGPHLIV APKAVLPNWS NEFKTWAPSI GTILYDGRPD
301: ERKSLRETNF GGQFNVLLTH YDLILKDKKF LKKVHWHYLI VDEGHRLKNH ECALARTLVS GYLIRRRLLL TGTPIQNSLQ ELWSLLNFIL PNIFNSSGNF
401: EEWFNAPFAC DVSINDEEEL LIIHRLHQVL RPFLLRRKKD EVEKYLPSKT QVILKCDFSA WQKAYYEQVA SKGKVALGSG LKPKAVANLS MQLRKCCNHP
501: YLFVEQYNMY QREEIVRASG KFELLDRLLP KLHRAGHRVL LFSQMTRLLN ILEVYLQMYN FKYMRLDGST KTEERGKLLA DFNKKDSEYF IFLLSTRAGG
601: LGLNLQTADT VIIFDSDWNP QMDQQAEDRA HRIGQKNEVR VFVLVSVGSI EEEILDRAKQ KMGIDAKVIQ AGLFNNTSTA QDRKALLQEI LKRGTSTLGT
701: DIPSEREINR LAARTEEEFW LFEKMDEERR RRENYKSRLM QGPEVPEWVF DISETLAEKL LAEEAKNPVI NTKRRRKEVV YSDSYVDQWM KSDEVYEDIP
801: KMTPRAKRSA YLSDIQEVDL HDRAKRLKYS DSADGAGNST WTPEKGRAGV SSYSKDENED DNDEDEVTAG GLQQGGSFTW NTLRRKRSSH STNPSSDPKG
901: RSAF
101: QVLKAGDQEA YMRMVEESKN ERLTMLLDKT NELLEGIGKA VQRQKDAEHV SRPEGSEDSE SDESPEESPS DDDADTHGSA NTSKFNAAGR RLDSTVHSIE
201: EKVTEQPSAL VGGELRPYQL EGLQWMLSLF NNNLNGILAD EMGLGKTIQT IALIAYLLEK KEVTGPHLIV APKAVLPNWS NEFKTWAPSI GTILYDGRPD
301: ERKSLRETNF GGQFNVLLTH YDLILKDKKF LKKVHWHYLI VDEGHRLKNH ECALARTLVS GYLIRRRLLL TGTPIQNSLQ ELWSLLNFIL PNIFNSSGNF
401: EEWFNAPFAC DVSINDEEEL LIIHRLHQVL RPFLLRRKKD EVEKYLPSKT QVILKCDFSA WQKAYYEQVA SKGKVALGSG LKPKAVANLS MQLRKCCNHP
501: YLFVEQYNMY QREEIVRASG KFELLDRLLP KLHRAGHRVL LFSQMTRLLN ILEVYLQMYN FKYMRLDGST KTEERGKLLA DFNKKDSEYF IFLLSTRAGG
601: LGLNLQTADT VIIFDSDWNP QMDQQAEDRA HRIGQKNEVR VFVLVSVGSI EEEILDRAKQ KMGIDAKVIQ AGLFNNTSTA QDRKALLQEI LKRGTSTLGT
701: DIPSEREINR LAARTEEEFW LFEKMDEERR RRENYKSRLM QGPEVPEWVF DISETLAEKL LAEEAKNPVI NTKRRRKEVV YSDSYVDQWM KSDEVYEDIP
801: KMTPRAKRSA YLSDIQEVDL HDRAKRLKYS DSADGAGNST WTPEKGRAGV SSYSKDENED DNDEDEVTAG GLQQGGSFTW NTLRRKRSSH STNPSSDPKG
901: RSAF
001: MALKSDDQEE YMKLAKESKN EKLTLFLEET NKIFVSLGAA VQRQKDAKLS ENTKLLKGSE SDLSDVDAPE DVLPAQDIEI IDSDNNDDSN DLLEGERQFN
101: LAIHSIQEKV TKQPSLLQGG ELRSYQLEGL QWMVSLYNND YNGILADEMG LGKTIQTIAL IAYLLESKDL HGPHLILAPK AVLPNWENEF ALWAPSISAF
201: LYDGSKEKRT EIRARIAGGK FNVLITHYDL IMRDKAFLKK IDWNYMIVDE GHRLKNHECA LAKTLGTGYR IKRRLLLTGT PIQNSLQELW SLLNFLLPHI
301: FNSIHNFEEW FNTPFAECGS ASLTDEEELL IINRLHHVIR PFLLRRKKSE VEKFLPGKTQ VILKCDMSAW QKLYYKQVTD VGRVGLHSGN GKSKSLQNLT
401: MQLRKCCNHP YLFVGADYNM CKKPEIVRAS GKFELLDRLL PKLKKAGHRI LLFSQMTRLI DLLEIYLSLN DYMYLRLDGS TKTDQRGILL KQFNEPDSPY
501: FMFLLSTRAG GLGLNLQTAD TIIIFDSDWN PQMDQQAEDR AHRIGQKKEV RVFVLVSIGS IEEVILERAK QKMGIDAKVI QAGLFNTTST AQDRREMLEE
601: IMSKGTSSLG EDVPSEREIN RLAARTEEEF WMFEQMDEER RKKENYKTRL MEEKEVPEWA YTSETQEDKT NAKNHFGSLT GKRKRKEAVY SDSLSDLQWM
701: KAMESEDEDA SKVSQKRKRT DTKTRMSNGS KAEAVLSESD EEKEEEEEER KEESGKESEE ENEKPLHSWK TNKKKRSRYP VMTSSPNSRG KGSSKGSKRN
101: LAIHSIQEKV TKQPSLLQGG ELRSYQLEGL QWMVSLYNND YNGILADEMG LGKTIQTIAL IAYLLESKDL HGPHLILAPK AVLPNWENEF ALWAPSISAF
201: LYDGSKEKRT EIRARIAGGK FNVLITHYDL IMRDKAFLKK IDWNYMIVDE GHRLKNHECA LAKTLGTGYR IKRRLLLTGT PIQNSLQELW SLLNFLLPHI
301: FNSIHNFEEW FNTPFAECGS ASLTDEEELL IINRLHHVIR PFLLRRKKSE VEKFLPGKTQ VILKCDMSAW QKLYYKQVTD VGRVGLHSGN GKSKSLQNLT
401: MQLRKCCNHP YLFVGADYNM CKKPEIVRAS GKFELLDRLL PKLKKAGHRI LLFSQMTRLI DLLEIYLSLN DYMYLRLDGS TKTDQRGILL KQFNEPDSPY
501: FMFLLSTRAG GLGLNLQTAD TIIIFDSDWN PQMDQQAEDR AHRIGQKKEV RVFVLVSIGS IEEVILERAK QKMGIDAKVI QAGLFNTTST AQDRREMLEE
601: IMSKGTSSLG EDVPSEREIN RLAARTEEEF WMFEQMDEER RKKENYKTRL MEEKEVPEWA YTSETQEDKT NAKNHFGSLT GKRKRKEAVY SDSLSDLQWM
701: KAMESEDEDA SKVSQKRKRT DTKTRMSNGS KAEAVLSESD EEKEEEEEER KEESGKESEE ENEKPLHSWK TNKKKRSRYP VMTSSPNSRG KGSSKGSKRN
Arabidopsis Description
CHR23Probable ATP-dependent DNA helicase CHR23 [Source:UniProtKB/Swiss-Prot;Acc:F4K128]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.