Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G06010.1 | Thale cress | nucleus | 79.04 | 76.32 |
| KRH35559 | Soybean | nucleus | 68.52 | 68.0 |
| KRG91253 | Soybean | nucleus | 68.33 | 67.75 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 69.45 | 67.0 |
| KRH27613 | Soybean | nucleus | 66.92 | 66.98 |
| Solyc01g079690.2.1 | Tomato | nucleus | 61.65 | 65.93 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 51.22 | 60.29 |
| Os05t0144300-01 | Rice | nucleus | 60.15 | 56.74 |
| Zm00001d024816_P007 | Maize | cytosol | 59.02 | 56.58 |
| Zm00001d006798_P002 | Maize | nucleus | 59.02 | 56.27 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 59.21 | 55.9 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 58.83 | 55.15 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 58.83 | 55.06 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 64.66 | 46.93 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 59.21 | 45.65 |
| AT5G66750.1 | Thale cress | cytosol | 23.68 | 32.98 |
| AT3G06400.3 | Thale cress | nucleus | 27.91 | 28.1 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 19.64 | 27.39 |
| AT5G18620.2 | Thale cress | nucleus | 27.35 | 27.15 |
| AT2G44980.2 | Thale cress | cytosol | 19.83 | 24.06 |
| AT4G31900.1 | Thale cress | nucleus | 22.74 | 20.13 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 23.87 | 18.01 |
| AT2G13370.2 | Thale cress | nucleus | 26.41 | 16.3 |
| AT3G57300.2 | Thale cress | cytosol | 23.4 | 16.17 |
| AT2G46020.3 | Thale cress | plastid | 31.11 | 15.09 |
| AT3G12810.1 | Thale cress | nucleus | 26.03 | 13.48 |
| AT5G44800.1 | Thale cress | nucleus | 24.15 | 11.56 |
| AT2G28290.5 | Thale cress | nucleus | 31.39 | 9.34 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:832051 | ProteinID:AED92683.1 | EMBL:AF296837 |
| ProteinID:ANM68677.1 | ArrayExpress:AT5G19310 | EnsemblPlantsGene:AT5G19310 | RefSeq:AT5G19310 | TAIR:AT5G19310 | RefSeq:AT5G19310-TAIR-G |
| EnsemblPlants:AT5G19310.1 | TAIR:AT5G19310.1 | EMBL:AY080694 | Unigene:At.43995 | ncoils:Coil | UniProt:F4K128 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006325 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009826 | GO:GO:0009987 | GO:GO:0010078 |
| GO:GO:0010231 | GO:GO:0010492 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016569 | GO:GO:0016787 |
| GO:GO:0031490 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | RefSeq:NP_001330405.1 | RefSeq:NP_197432.2 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | UniParc:UPI0000196DDF |
| SEG:seg | : | : | : | : | : |
Description
CHR23Probable ATP-dependent DNA helicase CHR23 [Source:UniProtKB/Swiss-Prot;Acc:F4K128]
Coordinates
chr5:+:6498743..6503692
Molecular Weight (calculated)
122893.0 Da
IEP (calculated)
6.892
GRAVY (calculated)
-0.721
Length
1064 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVKQLQEQEE NDPVEKTKSL ISALNYLSRD LLLPSHLYAS VSSIYHASVS DLSPSPPLRG NSYTPNRGDL MSEFEDALLQ QRLNYESGSR LAELKETRYK
0101: NRIHNRLSQL EGLPSNRGED LQEKCLLELY GLKLQELQCR VRGEVSAEYW LRLNCADPER QLYDWGMMRL PRRMYGVGDS FVMEADDQFR NKRDAERLLR
0201: LEEEEKNLIE TTQRKFFAEV LNAVREFQLQ IQASHRRCKQ RNDGVQAWHG KQRQRATRAE KLRIMALKSD DQEEYMKLAK ESKNEKLTLF LEETNKIFVS
0301: LGAAVQRQKD AKLSENTKLL KGSESDLSDV DAPEDVLPAQ DIEIIDSDNN DDSNDLLEGE RQFNLAIHSI QEKVTKQPSL LQGGELRSYQ LEGLQWMVSL
0401: YNNDYNGILA DEMGLGKTIQ TIALIAYLLE SKDLHGPHLI LAPKAVLPNW ENEFALWAPS ISAFLYDGSK EKRTEIRARI AGGKFNVLIT HYDLIMRDKA
0501: FLKKIDWNYM IVDEGHRLKN HECALAKTLG TGYRIKRRLL LTGTPIQNSL QELWSLLNFL LPHIFNSIHN FEEWFNTPFA ECGSASLTDE EELLIINRLH
0601: HVIRPFLLRR KKSEVEKFLP GKTQVILKCD MSAWQKLYYK QVTDVGRVGL HSGNGKSKSL QNLTMQLRKC CNHPYLFVGA DYNMCKKPEI VRASGKFELL
0701: DRLLPKLKKA GHRILLFSQM TRLIDLLEIY LSLNDYMYLR LDGSTKTDQR GILLKQFNEP DSPYFMFLLS TRAGGLGLNL QTADTIIIFD SDWNPQMDQQ
0801: AEDRAHRIGQ KKEVRVFVLV SIGSIEEVIL ERAKQKMGID AKVIQAGLFN TTSTAQDRRE MLEEIMSKGT SSLGEDVPSE REINRLAART EEEFWMFEQM
0901: DEERRKKENY KTRLMEEKEV PEWAYTSETQ EDKTNAKNHF GSLTGKRKRK EAVYSDSLSD LQWMKAMESE DEDASKVSQK RKRTDTKTRM SNGSKAEAVL
1001: SESDEEKEEE EEERKEESGK ESEEENEKPL HSWKTNKKKR SRYPVMTSSP NSRGKGSSKG SKRN
0101: NRIHNRLSQL EGLPSNRGED LQEKCLLELY GLKLQELQCR VRGEVSAEYW LRLNCADPER QLYDWGMMRL PRRMYGVGDS FVMEADDQFR NKRDAERLLR
0201: LEEEEKNLIE TTQRKFFAEV LNAVREFQLQ IQASHRRCKQ RNDGVQAWHG KQRQRATRAE KLRIMALKSD DQEEYMKLAK ESKNEKLTLF LEETNKIFVS
0301: LGAAVQRQKD AKLSENTKLL KGSESDLSDV DAPEDVLPAQ DIEIIDSDNN DDSNDLLEGE RQFNLAIHSI QEKVTKQPSL LQGGELRSYQ LEGLQWMVSL
0401: YNNDYNGILA DEMGLGKTIQ TIALIAYLLE SKDLHGPHLI LAPKAVLPNW ENEFALWAPS ISAFLYDGSK EKRTEIRARI AGGKFNVLIT HYDLIMRDKA
0501: FLKKIDWNYM IVDEGHRLKN HECALAKTLG TGYRIKRRLL LTGTPIQNSL QELWSLLNFL LPHIFNSIHN FEEWFNTPFA ECGSASLTDE EELLIINRLH
0601: HVIRPFLLRR KKSEVEKFLP GKTQVILKCD MSAWQKLYYK QVTDVGRVGL HSGNGKSKSL QNLTMQLRKC CNHPYLFVGA DYNMCKKPEI VRASGKFELL
0701: DRLLPKLKKA GHRILLFSQM TRLIDLLEIY LSLNDYMYLR LDGSTKTDQR GILLKQFNEP DSPYFMFLLS TRAGGLGLNL QTADTIIIFD SDWNPQMDQQ
0801: AEDRAHRIGQ KKEVRVFVLV SIGSIEEVIL ERAKQKMGID AKVIQAGLFN TTSTAQDRRE MLEEIMSKGT SSLGEDVPSE REINRLAART EEEFWMFEQM
0901: DEERRKKENY KTRLMEEKEV PEWAYTSETQ EDKTNAKNHF GSLTGKRKRK EAVYSDSLSD LQWMKAMESE DEDASKVSQK RKRTDTKTRM SNGSKAEAVL
1001: SESDEEKEEE EEERKEESGK ESEEENEKPL HSWKTNKKKR SRYPVMTSSP NSRGKGSSKG SKRN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.