Factsheet for AT2G25170.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56279	Canola	cytosol	86.52	90.84
Bra007814.1-P	Field mustard	nucleus	87.45	90.33
CDX76767	Canola	cytosol, nucleus, plastid	85.96	88.08
Solyc08g029120.1.1	Tomato	nucleus	37.52	74.93
KRH05279	Soybean	nucleus	22.41	69.76
VIT_04s0008g05880.t01	Wine grape	nucleus	68.51	65.62
KRH52357	Soybean	nucleus	66.6	65.21
KRH61691	Soybean	nucleus	66.52	65.05
AT4G31900.1	Thale cress	nucleus	53.83	63.14
Solyc06g065730.2.1	Tomato	nucleus	61.91	60.75
GSMUA_Achr4P21270_001	Banana	cytosol	57.3	58.59
KXG19483	Sorghum	cytosol	53.12	56.57
Zm00001d045109_P008	Maize	cytosol	52.7	55.7
TraesCS7B01G050100.3	Wheat	nucleus	53.33	55.5
TraesCS7A01G147100.2	Wheat	nucleus	53.26	55.26
TraesCS7D01G148900.4	Wheat	nucleus	52.7	52.88
AT5G66750.1	Thale cress	cytosol	15.89	29.32
AT5G18620.2	Thale cress	nucleus	20.21	26.59
AT3G06400.3	Thale cress	nucleus	19.86	26.49
AT2G44980.2	Thale cress	cytosol	16.03	25.77
AT2G02090.1	Thale cress	cytosol, plastid	13.9	25.69
AT5G19310.1	Thale cress	nucleus	18.01	23.87
AT3G06010.1	Thale cress	nucleus	18.37	23.5
AT2G13370.2	Thale cress	nucleus	24.4	19.95
AT5G44800.1	Thale cress	nucleus	25.6	16.24
AT3G57300.2	Thale cress	cytosol	16.81	15.39
AT3G12810.1	Thale cress	nucleus	20.28	13.92
AT2G46020.3	Thale cress	plastid	17.87	11.49
AT2G28290.5	Thale cress	nucleus	19.5	7.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.30.40.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EntrezGene:817055	UniProt:A0A1P8AZP6	ProteinID:ANM62114.1	ArrayExpress:AT2G25170	EnsemblPlantsGene:AT2G25170	RefSeq:AT2G25170
TAIR:AT2G25170	RefSeq:AT2G25170-TAIR-G	EnsemblPlants:AT2G25170.3	Unigene:At.11745	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom
InterPro:Chromo_domain	InterPro:DUF1086	InterPro:DUF1087	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR013083	InterPro:IPR014001
InterPro:IPR019787	InterPro:IPR038718	RefSeq:NP_001324293.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF00385	PFAM:PF00628	PFAM:PF06461	PFAM:PF06465	Symbol:PKL	ScanProsite:PS01359
PFscan:PS50013	PFscan:PS50016	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853
SMART:SM00249	SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01146	SMART:SM01147
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54160	SignalP:SignalP-noTM	UniParc:UPI000848FF42
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]

Coordinates

chr2:+:10714065..10724054

Molecular Weight (calculated)

161536.0 Da

IEP (calculated)

5.438

GRAVY (calculated)

-0.581

Length

1410 amino acids

Sequence
(BLAST)

0001: MLNCLFLWVI LARVFSNFSL VLFHKKMSSL VERLRIRSDR KPVYNLDDSD DDDFVPKKDR TFEQVEAIVR TDAKENACQA CGESTNLVSC NTCTYAFHAK
0101: CLVPPLKDAS VENWRCPECV SPLNEIDKIL DCEMRPTKSS EQGSSDAEPK PIFVKQYLVK WKGLSYLHCS WVPEKEFQKA YKSNHRLKTR VNNFHRQMES
0201: FNNSEDDFVA IRPEWTTVDR ILACREEDGE LEYLVKYKEL SYDECYWESE SDISTFQNEI QRFKDVNSRT RRSKDVDHKR NPRDFQQFDH TPEFLKGLLH
0301: PYQLEGLNFL RFSWSKQTHV ILADEMGLGK TIQSIALLAS LFEENLIPHL VIAPLSTLRN WEREFATWAP QMNVVMYFGT AQARAVIREH EFYLSKDQKK
0401: IKKKKSGQIS SESKQKRIKF DVLLTSYEMI NLDSAVLKPI KWECMIVDEG HRLKNKDSKL FSSLTQYSSN HRILLTGTPL QNNLDELFML MHFLDAGKFG
0501: SLEEFQEEFK DINQEEQISR LHKMLAPHLL RRVKKDVMKD MPPKKELILR VDLSSLQKEY YKAIFTRNYQ VLTKKGGAQI SLNNIMMELR KVCCHPYMLE
0601: GVEPVIHDAN EAFKQLLESC GKLQLLDKMM VKLKEQGHRV LIYTQFQHML DLLEDYCTHK KWQYERIDGK VGGAERQIRI DRFNAKNSNK FCFLLSTRAG
0701: GLGINLATAD TVIIYDSDWN PHADLQAMAR AHRLGQTNKV MIYRLINRGT IEERMMQLTK KKMVLEHLVV GKLKTQNINQ EELDDIIRYG SKELFASEDD
0801: EAGKSGKIHY DDAAIDKLLD RDLVEAEEVS VDDEEENGFL KAFKVANFEY IDENEAAALE AQRVAAESKS SAGNSDRASY WEELLKDKFE LHQAEELNAL
0901: GKRKRSRKQL VSIEEDDLAG LEDVSSDGDE SYEAESTDGE AAGQGVQTGR RPYRRKGRDN LEPTPLMEGE GRSFRVLGFN QSQRAIFVQT LMRYGAGNFD
1001: WKEFVPRLKQ KTFEEINEYG ILFLKHIAEE IDENSPTFSD GVPKEGLRIE DVLVRIALLI LVQEKVKFVE DHPGKPVFPS RILERFPGLR SGKIWKEEHD
1101: KIMIRAVLKH GYGRWQAIVD DKELGIQELI CKELNFPHIS LSAAEQAGLQ GQNGSGGSNP GAQTNQNPGS VITGNNNASA DGAQVNSMFY YRDMQRRLVE
1201: FVKKRVLLLE KAMNYEYAEE YYGLGGSSSI PTEEPEAEPK IADTVGVSFI EVDDEMLDGL PKTDPITSEE IMGAAVDNNQ ARVEIAQHYN QMCKLLDENA
1301: RESVQAYVNN QPPSTKVNES FRALKSINGN INTILSITSD QSKSHEDDTK PDLNNVEMKD TAEETKPLRG GVVDLNVVEG EENIAEASGS VDVKMEEAKE
1401: EEKPKNMVVD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.