Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18960 | Canola | cytosol | 88.03 | 88.84 |
| CDX74702 | Canola | cytosol | 87.57 | 88.28 |
| Bra004881.1-P | Field mustard | nucleus | 63.97 | 86.71 |
| VIT_15s0021g02180.t01 | Wine grape | cytosol | 67.73 | 69.47 |
| PGSC0003DMT400066819 | Potato | cytosol | 28.51 | 67.39 |
| KRH75253 | Soybean | cytosol, nucleus, plastid | 65.79 | 65.72 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 45.84 | 65.58 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.15 | 65.36 |
| HORVU4Hr1G088540.8 | Barley | cytosol | 61.35 | 61.0 |
| TraesCS5A01G541400.1 | Wheat | cytosol | 61.23 | 60.88 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 61.0 | 60.66 |
| OQU93492 | Sorghum | cytosol | 62.03 | 59.98 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 59.75 | 59.41 |
| Zm00001d048552_P005 | Maize | cytosol | 61.23 | 59.4 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 20.18 | 53.31 |
| AT5G66750.1 | Thale cress | cytosol | 23.83 | 27.36 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 19.95 | 22.94 |
| AT3G06400.3 | Thale cress | nucleus | 26.68 | 22.14 |
| AT5G18620.2 | Thale cress | nucleus | 27.02 | 22.11 |
| AT5G19310.1 | Thale cress | nucleus | 24.06 | 19.83 |
| AT3G06010.1 | Thale cress | nucleus | 24.74 | 19.69 |
| AT4G31900.1 | Thale cress | nucleus | 25.54 | 18.64 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 25.77 | 16.03 |
| AT3G57300.2 | Thale cress | cytosol | 25.31 | 14.42 |
| AT2G13370.2 | Thale cress | nucleus | 27.37 | 13.92 |
| Os03t0352500-01 | Rice | nucleus | 3.31 | 13.55 |
| AT3G12810.1 | Thale cress | nucleus | 24.63 | 10.51 |
| AT5G44800.1 | Thale cress | nucleus | 26.34 | 10.39 |
| AT2G46020.3 | Thale cress | plastid | 24.17 | 9.67 |
| AT2G28290.5 | Thale cress | nucleus | 24.97 | 6.13 |
| Os03t0352450-00 | Rice | nucleus | 1.14 | 2.18 |
Protein Annotations
| MapMan:12.4.1.1.1 | Gene3D:3.40.220.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:819106 | ProteinID:AEC10493.1 |
| ArrayExpress:AT2G44980 | EnsemblPlantsGene:AT2G44980 | RefSeq:AT2G44980 | TAIR:AT2G44980 | RefSeq:AT2G44980-TAIR-G | EnsemblPlants:AT2G44980.2 |
| TAIR:AT2G44980.2 | Unigene:At.47803 | ncoils:Coil | UniProt:F4IV45 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | RefSeq:NP_973689.2 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF52949 | UniParc:UPI00015058C6 |
| SEG:seg | : | : | : | : | : |
Description
CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
Coordinates
chr2:-:18552182..18556669
Molecular Weight (calculated)
98872.9 Da
IEP (calculated)
5.676
GRAVY (calculated)
-0.300
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL
101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHV KKSSKGHFLP FDVLLTTYDI ALVDQDFLSQ IPWQYAIIDE AQRLKNPNSV
201: LYNVLLEQFL IPRRLLITGT PIQNNLTELW ALMHFCMPLV FGTLDQFLSA FKETGDGLSG LDVSNDKETY KSLKFILGAF MLRRTKSLLI ESGNLVLPPL
301: TELTVMVPLV SLQKKIYTSI LRKELPGLLE LSSGGSNHTS LQNIVIQLRK ACSHPYLFPG IEPEPFEEGE HLVQASGKLL VLDQLLKRLH DSGHRVLLFS
401: QMTSTLDILQ DFMELRRYSY ERLDGSVRAE ERFAAIKNFS AKTERGLDSE VDGSNAFVFM ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI
501: GQISHVLSIN LVTEHSVEEV ILRRAERKLQ LSHNVVGDNM EEKEEDGGDL RSLVFGLQRF DPEEIHNEES DNLKMVEISS LAEKVVAIRQ NVEPDKEERR
601: FEINSSDTLL GNTSSASLDS ELDEASYLSW VEKLKEAARS SKDEKIIELG NRKNLSEERN LRIEAARKKA EEKKLATWGA HGYQSLSVEE PILPDDVDSS
701: SDAGSVNFVF GDCTNPSTVS HEPAIIFSCV DDSGNWGRGG MFDALSKLSN TVPTAYHRAS EFKDLHLGDL HLIKIDDNDD QQNTQASKPL WVAVAVTQSY
801: NSRRKVPRSS ISIPDLESCL AKASFSASQK SASLHMPRIG YQDGSDRSQW YTVERLLRKY SSIFTVKIFV YYYRRSP
101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHV KKSSKGHFLP FDVLLTTYDI ALVDQDFLSQ IPWQYAIIDE AQRLKNPNSV
201: LYNVLLEQFL IPRRLLITGT PIQNNLTELW ALMHFCMPLV FGTLDQFLSA FKETGDGLSG LDVSNDKETY KSLKFILGAF MLRRTKSLLI ESGNLVLPPL
301: TELTVMVPLV SLQKKIYTSI LRKELPGLLE LSSGGSNHTS LQNIVIQLRK ACSHPYLFPG IEPEPFEEGE HLVQASGKLL VLDQLLKRLH DSGHRVLLFS
401: QMTSTLDILQ DFMELRRYSY ERLDGSVRAE ERFAAIKNFS AKTERGLDSE VDGSNAFVFM ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI
501: GQISHVLSIN LVTEHSVEEV ILRRAERKLQ LSHNVVGDNM EEKEEDGGDL RSLVFGLQRF DPEEIHNEES DNLKMVEISS LAEKVVAIRQ NVEPDKEERR
601: FEINSSDTLL GNTSSASLDS ELDEASYLSW VEKLKEAARS SKDEKIIELG NRKNLSEERN LRIEAARKKA EEKKLATWGA HGYQSLSVEE PILPDDVDSS
701: SDAGSVNFVF GDCTNPSTVS HEPAIIFSCV DDSGNWGRGG MFDALSKLSN TVPTAYHRAS EFKDLHLGDL HLIKIDDNDD QQNTQASKPL WVAVAVTQSY
801: NSRRKVPRSS ISIPDLESCL AKASFSASQK SASLHMPRIG YQDGSDRSQW YTVERLLRKY SSIFTVKIFV YYYRRSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.