Factsheet for TraesCS4D01G364600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G372600.1	Wheat	cytosol	97.28	97.28
TraesCS5A01G541400.1	Wheat	cytosol	96.15	96.15
HORVU4Hr1G088540.8	Barley	cytosol	95.46	95.46
OQU93492	Sorghum	cytosol	81.29	79.05
Zm00001d048552_P005	Maize	cytosol	79.93	77.99
GSMUA_AchrUn_...	Banana	cytosol	37.98	69.07
PGSC0003DMT400066819	Potato	cytosol	26.42	62.8
VIT_15s0021g02180.t01	Wine grape	cytosol	60.66	62.57
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	42.74	61.5
KRH75253	Soybean	cytosol, nucleus, plastid	60.32	60.59
CDX74702	Canola	cytosol	59.64	60.46
CDY18960	Canola	cytosol	59.3	60.18
AT2G44980.2	Thale cress	cytosol	59.41	59.75
Bra004881.1-P	Field mustard	nucleus	42.29	57.65
TraesCS7D01G069700.1	Wheat	cytosol	20.52	23.23
TraesCS2D01G365000.1	Wheat	cytosol	21.09	22.66
TraesCS4D01G053600.2	Wheat	cytosol	20.86	22.04
TraesCS1D01G099600.1	Wheat	nucleus	24.83	19.78
TraesCS3D01G068900.1	Wheat	nucleus	24.72	19.45
TraesCS2D01G400400.1	Wheat	cytosol	18.71	18.77
TraesCS1D01G089200.2	Wheat	nucleus	23.13	17.94
TraesCS7D01G148900.4	Wheat	nucleus	24.26	15.23
TraesCS3D01G403600.1	Wheat	nucleus	21.09	15.15
Os03t0352500-01	Rice	nucleus	3.63	14.95
TraesCS4D01G159900.1	Wheat	nucleus	23.02	13.59
TraesCS2D01G130900.1	Wheat	nucleus	24.15	12.33
TraesCS2D01G234200.1	Wheat	nucleus	25.62	10.06
TraesCS7D01G531100.1	Wheat	nucleus	23.36	9.49
TraesCS6D01G039800.1	Wheat	nucleus, plastid	23.58	9.4
TraesCS7D01G206700.2	Wheat	nucleus	23.92	6.27
Os03t0352450-00	Rice	nucleus	1.25	2.4

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF52949	EnsemblPlantsGene:TraesCS4D01G364600	EnsemblPlants:TraesCS4D01G364600.1	TIGR:cd00046
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:509363547..509372144

Molecular Weight (calculated)

96911.3 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.270

Length

882 amino acids

Sequence
(BLAST)

001: MAATAYERRL LAAADLVLSA DGKSQLPRLS SADLGVTADL KPHQLDGVXX XXXXXXXXXX XXXXXXMGLG KTLQAISLLS YLKIKSIAPG PFLVLCPLSV
101: TDGWLSEFGK FCPTLKVIQY VGDKPHRRQI RRTIHEDVQN SSHSNELPFD VMLTSYDIAL MDQDFLSQIP WLYVVIDEAQ RLKNPSSVLY NVLEERFMMP
201: RRLLLTGTPV QNNLSELWAL MHFCMPSVFG SLDEFLSTFK EAGNLFSGSE ANKANRQFKI LKHILRAFML RRTKALLIES GILELPPLTE LTVMVPLAPL
301: QKKIYLSVLR KELQTLLSFT GGSSRHQSLQ NIVVQLRKAC SHPYLFSGIE PEPYEEGEHL VQASGKLIVL DLVLEKLHRL GHRVVLFAQM TQTLDILQDF
401: LELRNYTYER LDGSVRAEER FAAIRNFSSQ ATKGVVRDDS NPSGAFVFMI STRAGGVGLN LIGADTVIFY EQDWNPQADK QALQRTHRIG QLNHVLSINL
501: VSQRTIEEVI MRRAERKLKL SHNIFGDKDA TDGKGKDLGN EANDMRSIIF GLHQFDPADT AAETINEETL EKLKSMSENV IKMRTHEPSE KDDRAFEINP
601: DLTEGSGAVI TRACDSISID PGVDEAAYLS WVEKFKEASH SIEDVPVELE RQRPAPEDKL LKREANKKKA EEKRLAKWKD LGYQTLGVKV PDNIPNQNIS
701: DSGSVQLVYG DCTDPSKVCA AKPAIIFSCV DNSGTWGHGG MFDALTSLST YIPDAYHRAS EVDDLHMGDL HLIQLDEANC SRSLDAPLWV ALAVVQSYNP
801: KRKIPRSEIS MSDLELGLSK AAFSAAERSA SIHMPRIGQR SGAQRSEWYT IERLLRKYAS LHGIDIFVYY FRRPTRQQPD SD

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.