Factsheet for Bra004881.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74702	Canola	cytosol	98.3	73.1
AT2G44980.2	Thale cress	cytosol	86.71	63.97
GSMUA_AchrUn_...	Banana	cytosol, nucleus	26.89	52.41
VIT_15s0021g02180.t01	Wine grape	cytosol	66.77	50.53
KRH75253	Soybean	cytosol, nucleus, plastid	64.45	47.49
HORVU4Hr1G088540.8	Barley	cytosol	59.66	43.76
TraesCS5A01G541400.1	Wheat	cytosol	59.51	43.65
TraesCS4B01G372600.1	Wheat	cytosol	59.2	43.42
OQU93492	Sorghum	cytosol	60.74	43.33
Zm00001d048552_P005	Maize	cytosol	60.12	43.03
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	57.65	42.29
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	38.95	41.11
GSMUA_AchrUn_...	Banana	cytosol	27.36	36.49
PGSC0003DMT400066819	Potato	cytosol	19.63	34.23
Bra012099.1-P	Field mustard	cytosol	18.86	15.82
Os03t0352500-01	Rice	nucleus	4.79	14.49
Bra040221.1-P	Field mustard	nucleus	22.41	13.82
Bra020751.1-P	Field mustard	nucleus	22.26	13.68
Bra002173.1-P	Field mustard	nucleus	22.41	13.63
Bra017422.1-P	Field mustard	cytosol	15.61	13.25
Bra023689.1-P	Field mustard	nucleus	21.17	12.44
Bra011311.1-P	Field mustard	nucleus	22.72	12.11
Bra040237.1-P	Field mustard	nucleus	18.39	10.82
Bra007814.1-P	Field mustard	nucleus	22.26	10.55
Bra037150.1-P	Field mustard	nucleus	19.17	10.34
Bra014632.1-P	Field mustard	cytosol	20.4	8.72
Bra037208.1-P	Field mustard	nucleus	21.64	8.3
Bra007318.1-P	Field mustard	nucleus	17.93	7.75
Bra027574.1-P	Field mustard	nucleus	22.72	6.62
Bra034727.1-P	Field mustard	nucleus	20.4	6.54
Bra000409.1-P	Field mustard	plastid	20.25	6.06
Bra039296.1-P	Field mustard	plastid	19.63	5.94
Bra000114.1-P	Field mustard	nucleus	21.48	4.24
Os03t0352450-00	Rice	nucleus	1.08	1.53

Protein Annotations

Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra004881	EnsemblPlants:Bra004881.1
EnsemblPlants:Bra004881.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR038718	UniProt:M4CKZ5	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF949	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF52949	UniParc:UPI0002547E3E	SEG:seg	:

Description

AT2G44980 (E=5e-215) | transcription regulatory protein SNF2, putative

Coordinates

chrA05:-:2278325..2283046

Molecular Weight (calculated)

73190.9 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.478

Length

647 amino acids

Sequence
(BLAST)

001: MEYQRRLEAA TNIVLTANTQ ATHAPPDCRE FGVTATLKPH QVEGVSWLIH KYLLGVNVVL VVLCPLSVTD GWVSEINRFT PKLEVLRYVG DKDCRRDLRK
101: VMHDHVNKSS KESLLPFDVL LTTYDIALVD QDFLSQIPWQ YAVIDEAQRL KNPNSVIQLR KACSHPYLFP GIEPEPFEEG EHLVQDFMEL RKYSYERLDG
201: SVRAEERFAA IKSFSAKTER GLDSEADASN AFVFMISTRA GGVGLNLVAA DTVIFYEQDW NPQVDKQALQ RAHRIGQISH VLSINLVSEH TVEEVILRRA
301: ERKLQLSLNV VGDTTEDKEE DRGDLRSLVF GLQRFDPEEE TYDEESDNQK MVELSSLAEK VVAIRQNVEP DKEARKLEIN TSDTLERDSS SAASVYSELD
401: EASYLAWVEK LKEASRSSKD EKVMELGDRN NVTEERHVRV EAARKKAEEK KLATWEAHGY ESLSVEEPIF PDDVDSNSDA GSVQFVFGDC TNPSTVSQEP
501: AIIFSCVDDS GTWGRGGMFN ALSKLSSTVP DAYHRASEFK DLHLGDVHLI KIDDNDEQQN TEESKPLWVA LAVTQSYRPK RKVPRSSISI PDLERCLAKA
601: SFSASQKSAS LHMPRIGYQD GSDRSQWYTV ERLLRKYSSI FAVKIFV

Best Arabidopsis Sequence Match ( AT2G44980.2 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL
101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHV KKSSKGHFLP FDVLLTTYDI ALVDQDFLSQ IPWQYAIIDE AQRLKNPNSV
201: LYNVLLEQFL IPRRLLITGT PIQNNLTELW ALMHFCMPLV FGTLDQFLSA FKETGDGLSG LDVSNDKETY KSLKFILGAF MLRRTKSLLI ESGNLVLPPL
301: TELTVMVPLV SLQKKIYTSI LRKELPGLLE LSSGGSNHTS LQNIVIQLRK ACSHPYLFPG IEPEPFEEGE HLVQASGKLL VLDQLLKRLH DSGHRVLLFS
401: QMTSTLDILQ DFMELRRYSY ERLDGSVRAE ERFAAIKNFS AKTERGLDSE VDGSNAFVFM ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI
501: GQISHVLSIN LVTEHSVEEV ILRRAERKLQ LSHNVVGDNM EEKEEDGGDL RSLVFGLQRF DPEEIHNEES DNLKMVEISS LAEKVVAIRQ NVEPDKEERR
601: FEINSSDTLL GNTSSASLDS ELDEASYLSW VEKLKEAARS SKDEKIIELG NRKNLSEERN LRIEAARKKA EEKKLATWGA HGYQSLSVEE PILPDDVDSS
701: SDAGSVNFVF GDCTNPSTVS HEPAIIFSCV DDSGNWGRGG MFDALSKLSN TVPTAYHRAS EFKDLHLGDL HLIKIDDNDD QQNTQASKPL WVAVAVTQSY
801: NSRRKVPRSS ISIPDLESCL AKASFSASQK SASLHMPRIG YQDGSDRSQW YTVERLLRKY SSIFTVKIFV YYYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.