Factsheet for VIT_15s0021g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066819	Potato	cytosol	33.45	77.09
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	53.1	74.06
GSMUA_AchrUn_...	Banana	cytosol	40.7	71.75
KRH75253	Soybean	cytosol, nucleus, plastid	70.53	68.68
CDX74702	Canola	cytosol	69.47	68.28
CDY18960	Canola	cytosol	69.01	67.89
AT2G44980.2	Thale cress	cytosol	69.47	67.73
Bra004881.1-P	Field mustard	nucleus	50.53	66.77
OQU93492	Sorghum	cytosol	66.32	62.51
TraesCS5A01G541400.1	Wheat	cytosol	63.86	61.9
HORVU4Hr1G088540.8	Barley	cytosol	63.74	61.79
Zm00001d048552_P005	Maize	cytosol	65.26	61.73
TraesCS4B01G372600.1	Wheat	cytosol	63.63	61.68
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	62.57	60.66
GSMUA_AchrUn_...	Banana	cytosol, nucleus	21.99	56.63
VIT_04s0023g01610.t01	Wine grape	cytosol	23.51	26.48
VIT_01s0010g02080.t01	Wine grape	cytosol	19.53	22.94
VIT_05s0020g01780.t01	Wine grape	nucleus	27.02	21.39
VIT_05s0020g02960.t01	Wine grape	nucleus	24.68	19.13
VIT_04s0008g05880.t01	Wine grape	nucleus	28.19	16.37
VIT_08s0007g09020.t01	Wine grape	nucleus	25.61	14.07
Os03t0352500-01	Rice	nucleus	3.39	13.55
VIT_06s0009g03750.t01	Wine grape	nucleus	26.32	12.76
VIT_01s0011g01480.t01	Wine grape	nucleus	26.32	10.43
VIT_08s0007g06370.t01	Wine grape	nucleus	23.51	9.8
VIT_15s0046g02290.t01	Wine grape	plastid	24.33	9.19
VIT_05s0020g02020.t01	Wine grape	nucleus	25.03	8.0
Os03t0352450-00	Rice	nucleus	1.29	2.4

Protein Annotations

EntrezGene:100247895	wikigene:100247895	MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ProteinID:CCB43862	ProteinID:CCB43862.1	UniProt:F6GV79	EMBL:FN594952	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EntrezGene:LOC100247895	wikigene:LOC100247895
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF853	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
SUPFAM:SSF52949	UniParc:UPI0002109CEA	ArrayExpress:VIT_15s0021g02180	EnsemblPlantsGene:VIT_15s0021g02180	EnsemblPlants:VIT_15s0021g02180.t01	RefSeq:XP_002274161
RefSeq:XP_002274161.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:13101945..13117885

Molecular Weight (calculated)

96683.4 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.250

Length

855 amino acids

Sequence
(BLAST)

001: MNYEQRLIAA AKLVLDGDAR AEDAPVNWGE FGVTATLKPH QVEGVSWLIR RYLLGVNVVL GRMGLGKTLQ AISFLSYMKV HQKSPGPFLV LCPLSVTDGW
101: VSEIANFAPK LRVLRYVGDK EHRRSLRRTI YEQVKEQCSK SDVSALPFDL LLTTYDIALM DQHFLSQIPW HYAIIDEAQR LKNPSSVLYN VLKERFVMPR
201: RLLMTGTPIQ NNLTELWALM HFCMPSIFGT LEQFLSTFKE DGHPSSGEKV AEVKDQFRTL KYILGAFMLR RMKSKLIECG TLVLPPLTEI TVMAPLVSLQ
301: KKVYMSILRK ELPKLLAFSS GPSGHQSLQN IVIQLRKACS HPYLFPGIEP EPYEEGEHLV QASGKLIILD QLLQKLYNSG HRVLLFAQMT HTLDILQDFM
401: ELRKYSYERL DGSVRAEERF SAIRSFSRQI VEGSLNSQDV QSSAFVFMIS TRAGGVGLNL VAADTVIFYE QDWNPQVDKQ ALQRAHRIGQ MNHVLSINLV
501: TGRTVEEIIM RRAERKLQLS HNVVGEVDID REGKEMAGAE AGDLRSVIFG LRMIDPSEIN NDESSEPNMS ELDAMADKVV AIRHEQQLGK DDRKFEVNPM
601: DLLKGHDLIM DRSSVSVDFD PGLDEASYLV WVEKFKEASQ SSDDPIIQVG NRRKLPEEKL LKLEAARKKA EEEKLAKWEA HGYNSLSVKD PPSHVDVDMI
701: SDSGSVDFVY GDCTLPSKVC PSEATIIFSC IDDSGIWGHG GMFDALARLS SSVPDAYQRA SEFKDLHLGD LHFIKINEDC EEQRMDCNAP QWVALAVVQS
801: YNPRRKVPRS NISVPDLECC LSKASFLAAQ KSASIHMPRI GYQDRSEWYY FRRSS

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.