Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G022450.1 | Barley | nucleus | 25.75 | 79.09 |
| KRH14560 | Soybean | nucleus | 74.25 | 74.21 |
| KRH73568 | Soybean | nucleus | 40.1 | 72.59 |
| Solyc12g099910.1.1 | Tomato | nucleus | 70.11 | 72.41 |
| CDX81444 | Canola | nucleus | 68.75 | 71.59 |
| Bra037208.1-P | Field mustard | nucleus | 68.41 | 71.53 |
| CDY37209 | Canola | nucleus | 68.41 | 71.53 |
| AT2G13370.2 | Thale cress | nucleus | 69.94 | 71.52 |
| Os07t0660200-01 | Rice | nucleus | 23.65 | 66.09 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 61.15 | 64.17 |
| Zm00001d022405_P051 | Maize | nucleus | 59.39 | 60.73 |
| KXG36860 | Sorghum | nucleus | 59.39 | 60.63 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 58.59 | 59.78 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 58.48 | 59.66 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 58.48 | 59.66 |
| Zm00001d007089_P003 | Maize | nucleus | 54.68 | 55.5 |
| VIT_04s0023g01610.t01 | Wine grape | cytosol | 14.52 | 33.73 |
| VIT_05s0020g01780.t01 | Wine grape | nucleus | 20.14 | 32.87 |
| VIT_01s0010g02080.t01 | Wine grape | cytosol | 12.25 | 29.67 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 17.02 | 27.2 |
| VIT_15s0021g02180.t01 | Wine grape | cytosol | 12.76 | 26.32 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 19.4 | 23.23 |
| VIT_08s0007g09020.t01 | Wine grape | nucleus | 15.31 | 17.34 |
| VIT_01s0011g01480.t01 | Wine grape | nucleus | 20.99 | 17.15 |
| VIT_08s0007g06370.t01 | Wine grape | nucleus | 17.36 | 14.91 |
| VIT_15s0046g02290.t01 | Wine grape | plastid | 17.19 | 13.39 |
| VIT_05s0020g02020.t01 | Wine grape | nucleus | 18.95 | 12.49 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100261898 | wikigene:100261898 | MapMan:12.4.1.1.2 | MapMan:15.3.4.5 | Gene3D:2.40.50.40 |
| Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ProteinID:CCB49028 | ProteinID:CCB49028.1 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom |
| InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF4208 | UniProt:F6HA08 | EMBL:FN595504 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| EntrezGene:LOC100261898 | wikigene:LOC100261898 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 |
| PFAM:PF13907 | PFscan:PS50013 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF952 |
| SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01176 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | SUPFAM:SSF54160 | TIGR:TC64948 | UniParc:UPI0002109282 | ArrayExpress:VIT_06s0009g03750 | EnsemblPlantsGene:VIT_06s0009g03750 |
| EnsemblPlants:VIT_06s0009g03750.t01 | unigene:Vvi.3648 | RefSeq:XP_002275100 | RefSeq:XP_002275100.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:17025245..17065578
Molecular Weight (calculated)
201384.0 Da
IEP (calculated)
6.178
GRAVY (calculated)
-0.855
Length
1763 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFFRNYSNE TVAQSVLDEK GQGQNIDRVH SSVANEYVDA TSSEKDFESK VDGQYQSDGD TNDAGLQNEA AAADDIGLRI SNLQPSGRRT AMAGKWGSTF
0101: WKDCQPMGHR NGSESEQDSK CRFDCKNEEA LEDNSSDGRE VDKVQKGQND VPADEMSSDD YYEQDGEDQS DSLHYRGLNH SSVLNSQPQS RPVAVNMARN
0201: SKASNDNEYD DDEDGDNDGD ADYEDEDEEE EDDDPDDADF EPDYGVTSSR TANKYQDKDW NGEDSDEDDN SNDDLDVSDE DDAYYMKKPK GRLRGNSGRG
0301: LKPTKEHKSF PAPGRRKRGR TLLEDEDSYE KDSENDSDED FKSMTRRGAH LRKSKGGQSS TTANIIGRNS ELRTSSRSVR KVSYVESEES EEIDEGKKKK
0401: SQKEEIEEED CDSIEKVLWH QPKGMADEAL KNNKSTEPIL LSHLFDFEPN WNEMEFLIKW KGQSHLHCQW KSFSDLQNLS GFKKVLNYTK KVMEEVKYRN
0501: MFSREEIEVN DVSKEMDLDL IKQNSQVERI IAYRIGKEGS GDVMPEYLVK WQGLSYAEAT WEKDVDIAFA QDAIDEYKAR EAAAAIQGKM VDMQRKKSKA
0601: SLRKLDEQPG WLKGGQLRDY QLEGLNFLVN SWRNDTNVIL ADEMGLGKTV QSVSMLGFLQ NAQQIYGPFL VVVPLSTLSN WAKEFKKWLP DLNVIVYVGT
0701: RASREVCQQY EFYTNKKTGR TILFNALLTT YEVVLKDKAV LSKIKWNYLM VDEAHRLKNS EAQLYTTLSE FSAKNKLLIT GTPLQNSVEE LWALLHFLDP
0801: DKFKNKDDFV QNYKNLSSFN EMELANLHME LRPHILRRVI KDVEKSLPPK IERILRVEMS PLQKQYYKWI LERNFHDLNK GVRGNQVSLL NIVVELKKCC
0901: NHPFLFESAD HGYGGNRSTN DCGKLERLIL SSGKLVLLDK LLEKLHETNH RVLIFSQMVR MLDILAEYMS LRGFQFQRLD GSTKAELRQQ AMDHFNAPGS
1001: DDFCFLLSTR AGGLGINLAT ADTVIIFDSD WNPQNDLQAM SRAHRIGQRE VVNIYRFVTS KSVEENILKR AKQKMVLDHL VIQKLNAEGR LEKKESKKGS
1101: YFDKNELSAI LRFGAEELFK EDKNEEESKK RLLSMDIDEI LERAEKVEEK ETGEEGNELL SAFKVANFGS AEDDGSFWSR WIKPEAVAEA EDALAPRAAR
1201: NTKSYAEANQ PERISKRKKK AAEPQERAQK RRKADYLVHL VPRIEGAAAQ VRGWSYGNLP KRDASRFSRA VLKFGNPSQI GSIVMEVGGT IEAAPTEAQI
1301: ELFDALIDGC REAVKEGNLD PKGPMLDFFG VPVKANEVLN RVQELQLLAK RISRYEDPIA QFRVLMYLKP SNWSKGCGWN QIDDARLLLG IHYHGFGNWE
1401: KIRLDERLGL TKKIAPVELQ HHETFLPRAP NLKDRASALL EMELVAVGGK NTNTKASRKT SKKEKERENL MNISISRSKD RKGKPGFPVT NVQMRKDRSH
1501: KPHRVEPLVK EEGEMSGNEE VYEQFREVKW MEWCEDVMKT EIKTLNRLHK LQTTSANLPK DLVLSKIRKY LQLLGRRIDQ IVLEHDKEQY KQDRMIMRLW
1601: NYISTFSNLS GEKLRQIHSK LKQEQDEDGG VGSSHVNGSA WGPGDKDSDP GQFPSFHRHG ERPPRGYKNM SAYQTAEPVS KSHDAGKFEA WKRRRRADNI
1701: NTHSLTQPLP QRPMSNGSRL PDPNSLGILG SGPTDNRRFG NEKPSRMRQS GYPPRQGFSS VIK
0101: WKDCQPMGHR NGSESEQDSK CRFDCKNEEA LEDNSSDGRE VDKVQKGQND VPADEMSSDD YYEQDGEDQS DSLHYRGLNH SSVLNSQPQS RPVAVNMARN
0201: SKASNDNEYD DDEDGDNDGD ADYEDEDEEE EDDDPDDADF EPDYGVTSSR TANKYQDKDW NGEDSDEDDN SNDDLDVSDE DDAYYMKKPK GRLRGNSGRG
0301: LKPTKEHKSF PAPGRRKRGR TLLEDEDSYE KDSENDSDED FKSMTRRGAH LRKSKGGQSS TTANIIGRNS ELRTSSRSVR KVSYVESEES EEIDEGKKKK
0401: SQKEEIEEED CDSIEKVLWH QPKGMADEAL KNNKSTEPIL LSHLFDFEPN WNEMEFLIKW KGQSHLHCQW KSFSDLQNLS GFKKVLNYTK KVMEEVKYRN
0501: MFSREEIEVN DVSKEMDLDL IKQNSQVERI IAYRIGKEGS GDVMPEYLVK WQGLSYAEAT WEKDVDIAFA QDAIDEYKAR EAAAAIQGKM VDMQRKKSKA
0601: SLRKLDEQPG WLKGGQLRDY QLEGLNFLVN SWRNDTNVIL ADEMGLGKTV QSVSMLGFLQ NAQQIYGPFL VVVPLSTLSN WAKEFKKWLP DLNVIVYVGT
0701: RASREVCQQY EFYTNKKTGR TILFNALLTT YEVVLKDKAV LSKIKWNYLM VDEAHRLKNS EAQLYTTLSE FSAKNKLLIT GTPLQNSVEE LWALLHFLDP
0801: DKFKNKDDFV QNYKNLSSFN EMELANLHME LRPHILRRVI KDVEKSLPPK IERILRVEMS PLQKQYYKWI LERNFHDLNK GVRGNQVSLL NIVVELKKCC
0901: NHPFLFESAD HGYGGNRSTN DCGKLERLIL SSGKLVLLDK LLEKLHETNH RVLIFSQMVR MLDILAEYMS LRGFQFQRLD GSTKAELRQQ AMDHFNAPGS
1001: DDFCFLLSTR AGGLGINLAT ADTVIIFDSD WNPQNDLQAM SRAHRIGQRE VVNIYRFVTS KSVEENILKR AKQKMVLDHL VIQKLNAEGR LEKKESKKGS
1101: YFDKNELSAI LRFGAEELFK EDKNEEESKK RLLSMDIDEI LERAEKVEEK ETGEEGNELL SAFKVANFGS AEDDGSFWSR WIKPEAVAEA EDALAPRAAR
1201: NTKSYAEANQ PERISKRKKK AAEPQERAQK RRKADYLVHL VPRIEGAAAQ VRGWSYGNLP KRDASRFSRA VLKFGNPSQI GSIVMEVGGT IEAAPTEAQI
1301: ELFDALIDGC REAVKEGNLD PKGPMLDFFG VPVKANEVLN RVQELQLLAK RISRYEDPIA QFRVLMYLKP SNWSKGCGWN QIDDARLLLG IHYHGFGNWE
1401: KIRLDERLGL TKKIAPVELQ HHETFLPRAP NLKDRASALL EMELVAVGGK NTNTKASRKT SKKEKERENL MNISISRSKD RKGKPGFPVT NVQMRKDRSH
1501: KPHRVEPLVK EEGEMSGNEE VYEQFREVKW MEWCEDVMKT EIKTLNRLHK LQTTSANLPK DLVLSKIRKY LQLLGRRIDQ IVLEHDKEQY KQDRMIMRLW
1601: NYISTFSNLS GEKLRQIHSK LKQEQDEDGG VGSSHVNGSA WGPGDKDSDP GQFPSFHRHG ERPPRGYKNM SAYQTAEPVS KSHDAGKFEA WKRRRRADNI
1701: NTHSLTQPLP QRPMSNGSRL PDPNSLGILG SGPTDNRRFG NEKPSRMRQS GYPPRQGFSS VIK
0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
Arabidopsis Description
CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.