Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0660200-01 | Rice | nucleus | 55.4 | 50.4 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 99.13 | 32.93 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 98.78 | 32.81 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 98.78 | 32.81 |
| KXG36860 | Sorghum | nucleus | 93.21 | 30.98 |
| Zm00001d022405_P051 | Maize | nucleus | 92.51 | 30.8 |
| Zm00001d007089_P003 | Maize | nucleus | 86.06 | 28.44 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 80.14 | 27.38 |
| Solyc12g099910.1.1 | Tomato | nucleus | 78.75 | 26.48 |
| Bra037208.1-P | Field mustard | nucleus | 77.35 | 26.33 |
| CDY37209 | Canola | nucleus | 77.35 | 26.33 |
| CDX81444 | Canola | nucleus | 77.18 | 26.17 |
| AT2G13370.2 | Thale cress | nucleus | 77.87 | 25.93 |
| VIT_06s0009g03750.t01 | Wine grape | nucleus | 79.09 | 25.75 |
| KRH14560 | Soybean | nucleus | 77.87 | 25.34 |
| KRH73568 | Soybean | nucleus | 36.93 | 21.77 |
| HORVU3Hr1G012850.1 | Barley | nucleus | 39.2 | 19.86 |
| HORVU1Hr1G021540.17 | Barley | plasma membrane | 39.2 | 19.05 |
| HORVU4Hr1G088540.8 | Barley | cytosol | 27.18 | 17.69 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 28.4 | 10.72 |
| HORVU7Hr1G041450.33 | Barley | nucleus | 33.28 | 7.63 |
| HORVU6Hr1G006050.1 | Barley | plastid | 29.44 | 7.63 |
Protein Annotations
| MapMan:12.4.1.1.2 | MapMan:15.3.4.5 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A287HCJ5 | InterPro:DNA/RNA_helicase_DEAH_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0009506 | EnsemblPlantsGene:HORVU2Hr1G022450 | EnsemblPlants:HORVU2Hr1G022450.1 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF952 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000B4659AA | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:+:65225048..65230215
Molecular Weight (calculated)
66229.4 Da
IEP (calculated)
9.280
GRAVY (calculated)
-0.554
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MCQQHEFFTN KKGGRHVKFH TLITTYEVIL KDKAVLSKIK WSYLMVDEAH RLKNSEASLY IALLEFSTKN KLLITGTPLQ NSVEELWALL HFLDPVKFNS
101: KDTFVERYKN LSSFNETELA NLHMELRPHI LRRVIKDVEK SLPPKIERIL RIEMSPLQKQ YYKWILERNF QNLNKGVRGN QVSLLNVVVE LKKCCNHPFL
201: FESADHGYGG DSIGDRNKVE RIVMSSGKLV LLDKLLLRLR ETNHRVLIFS QMVRMLDILS EYLSLRGFQF QRLDGSTRAD LRHQAMEHFN APGSDDFCFL
301: LSTRAGGLGI NLATADTVII FDSDWNPQND LQAMSRAHRI GQQDTVNIYR FVTCKSVEED ILERAKKKMV LDHLVIQKLN AEGRLEKKET KKGGSMFDKN
401: ELSAILRFGA EELFKEEKTD EETKRKLESM DIDEILERAE KVETKAAEGE EGNELLSAFK VANFSSGEDD ASFWSRLIQP DPEDMGQETL APRAARNKKS
501: YVEDHQLDKN SSRKRRAVDA QEKPRRRSSR TVDTIVSLPF IDGAVAQVRN WSFGNMPKKD ASRFVRAYKW NGHN
101: KDTFVERYKN LSSFNETELA NLHMELRPHI LRRVIKDVEK SLPPKIERIL RIEMSPLQKQ YYKWILERNF QNLNKGVRGN QVSLLNVVVE LKKCCNHPFL
201: FESADHGYGG DSIGDRNKVE RIVMSSGKLV LLDKLLLRLR ETNHRVLIFS QMVRMLDILS EYLSLRGFQF QRLDGSTRAD LRHQAMEHFN APGSDDFCFL
301: LSTRAGGLGI NLATADTVII FDSDWNPQND LQAMSRAHRI GQQDTVNIYR FVTCKSVEED ILERAKKKMV LDHLVIQKLN AEGRLEKKET KKGGSMFDKN
401: ELSAILRFGA EELFKEEKTD EETKRKLESM DIDEILERAE KVETKAAEGE EGNELLSAFK VANFSSGEDD ASFWSRLIQP DPEDMGQETL APRAARNKKS
501: YVEDHQLDKN SSRKRRAVDA QEKPRRRSSR TVDTIVSLPF IDGAVAQVRN WSFGNMPKKD ASRFVRAYKW NGHN
0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
Arabidopsis Description
CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.