Factsheet for HORVU1Hr1G021540.17

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G118900.2	Wheat	nucleus	91.96	98.19
TraesCS1D01G099600.1	Wheat	nucleus	91.87	98.01
TraesCS1A01G091100.1	Wheat	nucleus	91.45	97.65
CDY47176	Canola	cytosol	35.9	89.45
Os05t0150300-01	Rice	nucleus	82.56	84.2
KRH21031	Soybean	nucleus	74.43	82.38
KRH11241	Soybean	nucleus	74.77	82.37
CDY18857	Canola	nucleus	73.16	82.36
Bra040221.1-P	Field mustard	nucleus	73.07	82.27
AT3G06400.3	Thale cress	nucleus	73.33	81.93
KRH50913	Soybean	nucleus	73.24	81.76
VIT_05s0020g01780.t01	Wine grape	nucleus	74.68	81.67
PGSC0003DMT400079102	Potato	nucleus	72.99	81.47
Solyc06g054560.2.1	Tomato	nucleus	73.16	81.43
KRH02212	Soybean	nucleus	72.99	81.4
CDY24695	Canola	nucleus	72.14	80.91
Bra020751.1-P	Field mustard	nucleus	71.97	80.72
PGSC0003DMT400058376	Potato	nucleus	72.57	80.55
GSMUA_Achr3P23910_001	Banana	nucleus	72.9	80.54
AT5G18620.2	Thale cress	nucleus	73.07	80.5
Solyc01g067390.2.1	Tomato	nucleus	72.48	80.38
CDX92595	Canola	nucleus	60.46	79.87
Bra002173.1-P	Field mustard	nucleus	71.38	79.23
CDY13907	Canola	nucleus	71.04	79.23
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	72.99	76.08
CDY02609	Canola	nucleus	67.57	75.64
HORVU3Hr1G012850.1	Barley	nucleus	71.89	74.93
Bra023689.1-P	Field mustard	nucleus	69.01	74.02
HORVU2Hr1G022450.1	Barley	nucleus	19.05	39.2
HORVU4Hr1G088540.8	Barley	cytosol	19.22	25.74
HORVU4Hr1G046140.4	Barley	nucleus	20.83	16.17
HORVU6Hr1G006050.1	Barley	plastid	24.22	12.92
HORVU7Hr1G041450.33	Barley	nucleus	25.74	12.15

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A287EV18
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044
EnsemblPlantsGene:HORVU1Hr1G021540	EnsemblPlants:HORVU1Hr1G021540.17	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111
PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb
InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI000B466AC3	SEG:seg

Description

Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:A0A287EV18]

Coordinates

chrchr1H:-:86417885..86428489

Molecular Weight (calculated)

135405.0 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.860

Length

1181 amino acids

Sequence
(BLAST)

0001: TPIQASTPPN FFPLLFQTSA RASTKRSARQ ANPRPINPLP PQIPIPPPIY RPPLALPIPS PPRSRETLAL PPTMGNPADY EDEEDEELSS SGDAEGEEQQ
0101: QQQEEGSDEG EEEEDDEEEE QEPEGEQAAG DGGEEEEEVD EEEIVAATTG AGADDYDDDG GDGAGGAEEA ESTEDDAAAE EGGEEDADES EDATGKTEIG
0201: KRERAKLREM QKLKKQKIQE ILDSQNASID ADMNKKGKGR LKYLLQQTEI FAHFAKGSQS AEKKNRGKGR HASKVTEEEE DEEYLKEEDA LAAGGTRLLV
0301: QPSCITGKMR DYQLAGLNWL IRLYENGING ILADEMGLGK TLQTISLLGY LHEFRGITGP HMVVAPKSTL GNWMKEIQRF CPVLRAVKFL GNPEERNHIR
0401: ENLLAPGKFD VCVTSFEMAI KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWSLL NFLLPEIFSS AETFDEWFQI
0501: SGENDQHEVV QQLHKVLRPF LLRRLKSDVE KGLPPKKETI LKVGMSEMQK QYYRALLQKD LEVINAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT
0601: TGDHLIENAG KMVLLDKLLP KLKARDSRVL IFSQMTRLLD ILEDYLMYRG YQYCRIDGNT GGDDRDASIE AFNKPGSEKF IFLLSTRAGG LGINLATADI
0701: VVLYDSDWNP QVDLQAQDRA HRIGQKKEVQ VFRFCTEYTI EEKVIERAYK KLALDALVIQ QGRLAEQKAV NKDELLQMVR FGAEMVFSSK DSTITDEDID
0801: RIIARGEEAT AQLDAKMKKF TEDAIKFKMD DTAELYDFDD DKEEDKPDFK KLVSDNWIEP PRRERKRNYS ESEYFKQALR QGAPAKPREP RIPRMPNLHD
0901: FQFFNTQRLN ELYEKEVKYL VQTNQKKDTI GDGDGEDEEV EPLTEEEQEE KEQLLEEGFS TWTRRDFNTF IRACEKYGRE DIKSIASEME GKTEEEVQRY
1001: AEVFKERYTE LNDYDRIIKN IEKGESKISR KDEIMKAIAK KMDRYKNPWL ELKIQYGQNK GKLYNEECDR FLLCMVHKLG YGNWEELKSA FRMSPLFRFD
1101: WFVKSRTTQE LARRCDTLIR LVEKENQECD ERDRQARKDK KNMTPTKRPS SSSPAMDSPT QTPSKRGRRD GSAASGKRRR R

Best Arabidopsis Sequence Match ( AT3G06400.2 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.