Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47176 | Canola | cytosol | 41.98 | 94.94 |
| AT3G06400.3 | Thale cress | nucleus | 91.14 | 92.43 |
| CDY13907 | Canola | nucleus | 90.76 | 91.88 |
| CDX92595 | Canola | nucleus | 76.59 | 91.83 |
| Bra002173.1-P | Field mustard | nucleus | 91.14 | 91.82 |
| KRH11241 | Soybean | nucleus | 87.03 | 87.03 |
| KRH21031 | Soybean | nucleus | 86.57 | 86.97 |
| VIT_05s0020g01780.t01 | Wine grape | nucleus | 86.94 | 86.3 |
| KRH50913 | Soybean | nucleus | 84.98 | 86.11 |
| KRH02212 | Soybean | nucleus | 84.24 | 85.27 |
| PGSC0003DMT400058376 | Potato | nucleus | 84.61 | 85.24 |
| Solyc01g067390.2.1 | Tomato | nucleus | 84.33 | 84.88 |
| PGSC0003DMT400079102 | Potato | nucleus | 83.68 | 84.78 |
| Solyc06g054560.2.1 | Tomato | nucleus | 83.68 | 84.54 |
| Bra023689.1-P | Field mustard | nucleus | 86.66 | 84.38 |
| CDY02609 | Canola | nucleus | 82.37 | 83.7 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 83.58 | 82.89 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 79.85 | 80.07 |
| KXG32501 | Sorghum | nucleus | 81.72 | 79.13 |
| Os01t0367900-01 | Rice | nucleus | 81.62 | 79.04 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 80.6 | 78.05 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 80.41 | 77.94 |
| TraesCS1A01G091100.1 | Wheat | nucleus | 80.04 | 77.58 |
| Zm00001d040831_P021 | Maize | nucleus | 80.97 | 77.5 |
| Zm00001d009312_P028 | Maize | nucleus | 81.53 | 77.35 |
| Os05t0150300-01 | Rice | nucleus | 80.5 | 74.53 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 77.89 | 73.63 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 76.96 | 73.59 |
| TraesCS3A01G069900.2 | Wheat | nucleus | 77.15 | 73.19 |
| HORVU1Hr1G021540.17 | Barley | plasma membrane | 80.5 | 73.07 |
| HORVU3Hr1G012850.1 | Barley | nucleus | 76.21 | 72.11 |
| AT5G66750.1 | Thale cress | cytosol | 24.91 | 34.95 |
| AT5G19310.1 | Thale cress | nucleus | 27.15 | 27.35 |
| AT2G44980.2 | Thale cress | cytosol | 22.11 | 27.02 |
| AT3G06010.1 | Thale cress | nucleus | 27.52 | 26.77 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 18.84 | 26.47 |
| AT4G31900.1 | Thale cress | nucleus | 23.97 | 21.38 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 26.59 | 20.21 |
| AT2G13370.2 | Thale cress | nucleus | 31.9 | 19.84 |
| AT3G57300.2 | Thale cress | cytosol | 22.85 | 15.91 |
| AT3G12810.1 | Thale cress | nucleus | 26.21 | 13.67 |
| AT5G44800.1 | Thale cress | nucleus | 26.31 | 12.69 |
| AT2G46020.3 | Thale cress | plastid | 25.84 | 12.63 |
| AT2G28290.5 | Thale cress | nucleus | 27.89 | 8.36 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:1.10.1040.30 | MapMan:12.4.1.1.4 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:831980 |
| ProteinID:AED92588.1 | ArrayExpress:AT5G18620 | EnsemblPlantsGene:AT5G18620 | RefSeq:AT5G18620 | TAIR:AT5G18620 | RefSeq:AT5G18620-TAIR-G |
| EnsemblPlants:AT5G18620.2 | TAIR:AT5G18620.2 | Unigene:At.19176 | Symbol:CHR17 | ncoils:Coil | UniProt:F4JY25 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006325 | GO:GO:0006338 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0016043 |
| GO:GO:0016569 | GO:GO:0016584 | GO:GO:0016589 | GO:GO:0016787 | GO:GO:0016818 | GO:GO:0016887 |
| GO:GO:0031491 | GO:GO:0043044 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:Homeobox-like_sf | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR017884 | InterPro:IPR036306 | InterPro:IPR038718 | InterPro:ISWI | InterPro:ISWI_HAND-dom |
| InterPro:ISWI_HAND-dom_sf | RefSeq:NP_850847.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF09110 |
| PFAM:PF09111 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51293 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF887 | InterPro:SANT/Myb |
| InterPro:SANT_dom | InterPro:SLIDE | SMART:SM00487 | SMART:SM00490 | SMART:SM00717 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF101224 | SUPFAM:SSF46689 | SUPFAM:SSF52540 | UniParc:UPI0000196DC8 | SEG:seg |
Description
CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
Coordinates
chr5:-:6195795..6202166
Molecular Weight (calculated)
124169.0 Da
IEP (calculated)
5.633
GRAVY (calculated)
-0.786
Length
1072 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.