Factsheet for TraesCS3B01G083400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G068900.1	Wheat	nucleus	96.3	97.41
TraesCS3A01G069900.2	Wheat	nucleus	96.65	96.99
HORVU3Hr1G012850.1	Barley	nucleus	90.48	90.56
CDY47176	Canola	cytosol	35.89	85.86
Os01t0367900-01	Rice	nucleus	81.22	83.2
KXG32501	Sorghum	nucleus	80.51	82.48
Zm00001d040831_P021	Maize	nucleus	79.89	80.89
Zm00001d009312_P028	Maize	nucleus	80.34	80.62
KRH21031	Soybean	nucleus	75.4	80.13
KRH11241	Soybean	nucleus	75.04	79.38
KRH50913	Soybean	nucleus	73.99	79.3
TraesCS1B01G118900.2	Wheat	nucleus	77.16	79.11
KRH02212	Soybean	nucleus	73.81	79.04
CDY18857	Canola	nucleus	73.02	78.93
Bra040221.1-P	Field mustard	nucleus	72.93	78.84
AT3G06400.3	Thale cress	nucleus	73.46	78.81
CDY24695	Canola	nucleus	72.66	78.25
VIT_05s0020g01780.t01	Wine grape	nucleus	74.52	78.24
Bra020751.1-P	Field mustard	nucleus	72.58	78.16
PGSC0003DMT400079102	Potato	nucleus	72.84	78.07
Solyc06g054560.2.1	Tomato	nucleus	72.93	77.95
AT5G18620.2	Thale cress	nucleus	73.63	77.89
PGSC0003DMT400058376	Potato	nucleus	73.02	77.82
Solyc01g067390.2.1	Tomato	nucleus	73.02	77.75
CDX92595	Canola	nucleus	60.67	76.96
CDY13907	Canola	nucleus	71.52	76.58
GSMUA_Achr3P23910_001	Banana	nucleus	72.13	76.52
Bra002173.1-P	Field mustard	nucleus	71.69	76.41
CDY02609	Canola	nucleus	68.08	73.18
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	72.66	72.73
Bra023689.1-P	Field mustard	nucleus	70.46	72.57
TraesCS2B01G385300.1	Wheat	cytosol	23.81	32.97
TraesCS4B01G053600.1	Wheat	cytosol, plastid	23.81	29.8
TraesCS1B01G106900.4	Wheat	nucleus	25.84	25.82
TraesCS4B01G372600.1	Wheat	cytosol	19.84	25.51
TraesCS2B01G421200.3	Wheat	cytosol	17.99	22.9
TraesCS7B01G050100.3	Wheat	nucleus	24.96	20.89
TraesCS3B01G442200.1	Wheat	nucleus	20.72	20.42
TraesCS2B01G150500.1	Wheat	nucleus	29.54	19.39
TraesCS4B01G162000.1	Wheat	nucleus	21.34	16.18
TraesCS7B01G468100.1	Wheat	nucleus	24.16	12.62
TraesCS2B01G251900.1	Wheat	nucleus	24.34	12.32
TraesCS6B01G048200.2	Wheat	nucleus, plastid	23.81	12.22
TraesCS7B01G110600.1	Wheat	nucleus	26.72	8.96

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006338	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016589	GO:GO:0016787
GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718
InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF09110	PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799
PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490
SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS3B01G083400	EnsemblPlants:TraesCS3B01G083400.1	TIGR:cd00046	TIGR:cd00079	TIGR:cd00167	SEG:seg

Description

No Description!

Coordinates

chr3B:-:52727075..52734870

Molecular Weight (calculated)

130334.0 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.851

Length

1134 amino acids

Sequence
(BLAST)

0001: MARPARRRVV EEEEEEEEEE ESSGEEQQDQ SDAGGSGSGE EEGGGGEAEE EVDEDEIEAV TTGAGADDEE EEEDGGEEDE EEEPESDDDD DEAEDPAGIP
0101: EVGKQERARL KQLQKLKKQK IQEILQTQNA AIDADMNKKG KGRLKYLLQQ TEVFAHFAEG SQAKEKKPRG RGRPSSKRRA EEEDDEEYLE EEEDALASSV
0201: GTHLLVQPSC INGQMRDYQL AGLNWLIRLY DNGINGILAD EMGLGKTLQT ISLMGYLHEF RGITGPHMVV APKSTLGNWM NEIARFCPIL RAVKFLGNPE
0301: ERNHIREKLL QPGKFDVCVT SFEMAIKEKN ALKRFSWRYI IIDEAHRIKN ENSLLSKTMR LFSTNYRLLI TGTPLQNNLH ELWSLLNFLL PEIFSSAETF
0401: DEWFQITGET DQQEVVQQLH KVLRPFLLRR LKSDVEKGLP PKKEIILKVG MSQMQKQYYR GLLQKDLEVI NAGGERKRLL NIAMQLRKCC NHPYLFQGAE
0501: PGPPYTTGDH LIETAGKMVL LDKLLPKLKD RDSRVLIFSQ MTRLLDILED YLMYRGYQYC RIDGSTGGED RDASIDAFNK PGSEKFVFLL STRAGGLGIN
0601: LATADVVILY DSDWNPQADL QAQDRAHRIG QKKEVQVFRF CTEYTIEEKV IERAYKKLAL DALVIQQGRL SGQKTVNKDD LLQMVRYGAE MVFSSKDSTI
0701: TDEDVDRIIA KGEETKAALD AKMKKFTEDA IKFKMDDTAE LYDFDGDKEE NEADFKKIVA ENLVVELPRR ERIRNYNESE YFKQALRQAA PAKPKELRIP
0801: KMPTLHDFQF FNSQRLNELY EKEVRHLVQT NQKKDTIDGE DEGTDQVEPF TAEELEEKQR LLEAGFPTWT KRDFNTFIRA CEKYGRNDIK GISSEMEGKT
0901: EEEVQRYAEV FKERYKELSD YDRIIKNIER GEARITRKDE IMTAIGKKLD RYKNPWLELK VQYGTNKGKF YNEECDRFML CMAHKLGYGK WDELRSAFRK
1001: SPLFRFDWFV KARSAQELAR RCDTLVRLVE KENQEHDERE RQARKEKRLA KKMTPTKQKM TPTKQKMTPT KQAASRVPDG ETAPANPSKK NKTPTKQKMT
1101: PTKRAGETAP APSSKKRRQS LMDDFLGSGK KGKV

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.