Factsheet for TraesCS1B01G106900.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G087900.1	Wheat	nucleus	79.38	99.67
TraesCS1D01G089200.2	Wheat	nucleus	99.56	99.38
Os05t0144300-01	Rice	nucleus	80.97	81.47
Zm00001d024816_P007	Maize	cytosol	78.77	80.54
Zm00001d006798_P002	Maize	nucleus	78.59	79.93
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.3	79.86
KRH27613	Soybean	nucleus	61.15	65.29
Solyc01g079690.2.1	Tomato	nucleus	56.92	64.92
KRH35559	Soybean	nucleus	60.44	63.99
KRG91253	Soybean	nucleus	60.26	63.75
VIT_05s0020g02960.t01	Wine grape	nucleus	61.23	63.01
CDY18840	Canola	nucleus	57.27	60.02
AT3G06010.1	Thale cress	nucleus	58.24	59.98
Bra040237.1-P	Field mustard	nucleus	57.44	59.27
AT5G19310.1	Thale cress	nucleus	55.15	58.83
GSMUA_Achr6P20210_001	Banana	nucleus	63.79	49.39
GSMUA_Achr8P06840_001	Banana	nucleus	58.77	48.33
TraesCS2B01G385300.1	Wheat	cytosol	21.76	30.16
TraesCS4B01G053600.1	Wheat	cytosol, plastid	22.47	28.15
TraesCS1B01G118900.2	Wheat	nucleus	25.99	26.67
TraesCS3B01G083400.1	Wheat	nucleus	25.82	25.84
TraesCS2B01G421200.3	Wheat	cytosol	18.85	24.02
TraesCS4B01G372600.1	Wheat	cytosol	17.97	23.13
TraesCS3B01G442200.1	Wheat	nucleus	22.11	21.81
TraesCS7B01G050100.3	Wheat	nucleus	22.29	18.67
TraesCS4B01G162000.1	Wheat	nucleus	21.94	16.64
TraesCS2B01G150500.1	Wheat	nucleus	24.76	16.26
TraesCS6B01G048200.2	Wheat	nucleus, plastid	31.1	15.97
TraesCS7B01G468100.1	Wheat	nucleus	23.17	12.11
TraesCS2B01G251900.1	Wheat	nucleus	22.73	11.51
TraesCS7B01G110600.1	Wheat	nucleus	31.45	10.56

Protein Annotations

MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0042393	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873	SMART:SM00487	SMART:SM00490
SMART:SM01314	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	InterPro:SnAC	EnsemblPlantsGene:TraesCS1B01G106900
EnsemblPlants:TraesCS1B01G106900.4	TIGR:cd00046	TIGR:cd00079	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:118510269..118527073

Molecular Weight (calculated)

128777.0 Da

IEP (calculated)

6.073

GRAVY (calculated)

-0.599

Length

1135 amino acids

Sequence
(BLAST)

0001: MAASVDAAAA VAAPAPAPPV AAPEEAGGGD AEQARILIGA LNLLSRNLPL PPAVLRAVSS IYHGGEDADQ EEEEEGAEGP SLVGDEGGEG DPADAVDAAE
0101: VRAGASPLCG AFRLDALASC SSMGTLVPGF GLEATLIQEL EDSIYRNQMT HMSSSKLTAL KEERFNTCIQ HRLSELEGLP STRGEDLQMK CLLELYGLKL
0201: LDLQKKVRSD VNAEYWLHKK CAHPERQLFD WGMMRIRYPF TMYGIGDGFS MDTDDIHRKK RFTERISKLE EEEKNQAETR KRRFFTEILN AAREYQVQTS
0301: ATYKRRKQRN DGVQAWHVRA RQRINRLEKS RLQVLKAGDQ EAYMRMVEES KNERLTMLLD KTNELLEGIG KAVQRQKDAE HVSRPEGSED SESDESPEES
0401: PSDDDADTHG SANTSKFNAA GRRLDSTVHS IEEKVTEQPS ALVGGELRPY QLEGLQWMLS LFNNNLNGIL ADEMGLGKTI QTIALIAYLL EKKEVTGPHL
0501: IVAPKAVLPN WSNEFKTWAP SIGTILYDGR PDERKSLRET NFGGQFNVLL THYDLILKDK KFLKKVHWHY LIVDEGHRLK NHECALARTL VSGYLIRRRL
0601: LLTGTPIQNS LQELWSLLNF ILPNIFNSSG NFEEWFNAPF ACDVSINDEE ELLIIHRLHQ VLRPFLLRRK KDEVEKYLPS KTQVILKCDF SAWQKAYYEQ
0701: VASKGKVALG SGLKPKAVAN LSMQLRKCCN HPYLFVEQYN MYQREEIVRA SGKFELLDRL LPKLHRAGHR VLLFSQMTRL LNILEVYLQM YNFKYMRLDG
0801: STKTEERGKL LADFNKDSEY FIFLLSTRAG GLGLNLQTAD TVIIFDSDWN PQMDQQAEDR AHRIGQKNEV RVFVLVSVGS IEEEILDRAK QKMGIDAKVI
0901: QAGLFNNTST AQDRKALLQE ILKRGTSTLG TDIPSEREIN RLAARTEEEF WLFEKMDEER RRRENYKSRL MQGPEVPEWV FDISETLAEK LLAEEAKNPV
1001: INTKRRRKEV VYSDSYVDQW MKSDEVYEDI PKMTPRAKRS AYLSDIQEVD LHDRAKRLKY SESADGAGNS TWTPEKGRPG VSSYSKDENE DDNDEDEVTA
1101: GGLQQGGSFT WNTLRRKRSS HSTNPSSDPK GRSAF

Best Arabidopsis Sequence Match ( AT5G19310.2 )
(BLAST)

001: MALKSDDQEE YMKLAKESKN EKLTLFLEET NKIFVSLGAA VQRQKDAKLS ENTKLLKGSE SDLSDVDAPE DVLPAQDIEI IDSDNNDDSN DLLEGERQFN
101: LAIHSIQEKV TKQPSLLQGG ELRSYQLEGL QWMVSLYNND YNGILADEMG LGKTIQTIAL IAYLLESKDL HGPHLILAPK AVLPNWENEF ALWAPSISAF
201: LYDGSKEKRT EIRARIAGGK FNVLITHYDL IMRDKAFLKK IDWNYMIVDE GHRLKNHECA LAKTLGTGYR IKRRLLLTGT PIQNSLQELW SLLNFLLPHI
301: FNSIHNFEEW FNTPFAECGS ASLTDEEELL IINRLHHVIR PFLLRRKKSE VEKFLPGKTQ VILKCDMSAW QKLYYKQVTD VGRVGLHSGN GKSKSLQNLT
401: MQLRKCCNHP YLFVGADYNM CKKPEIVRAS GKFELLDRLL PKLKKAGHRI LLFSQMTRLI DLLEIYLSLN DYMYLRLDGS TKTDQRGILL KQFNEPDSPY
501: FMFLLSTRAG GLGLNLQTAD TIIIFDSDWN PQMDQQAEDR AHRIGQKKEV RVFVLVSIGS IEEVILERAK QKMGIDAKVI QAGLFNTTST AQDRREMLEE
601: IMSKGTSSLG EDVPSEREIN RLAARTEEEF WMFEQMDEER RKKENYKTRL MEEKEVPEWA YTSETQEDKT NAKNHFGSLT GKRKRKEAVY SDSLSDLQWM
701: KAMESEDEDA SKVSQKRKRT DTKTRMSNGS KAEAVLSESD EEKEEEEEER KEESGKESEE ENEKPLHSWK TNKKKRSRYP VMTSSPNSRG KGSSKGSKRN

Arabidopsis Description

CHR23Probable ATP-dependent DNA helicase CHR23 [Source:UniProtKB/Swiss-Prot;Acc:F4K128]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.