Factsheet for VIT_05s0020g02960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35559	Soybean	nucleus	76.07	78.26
KRH27613	Soybean	nucleus	75.25	78.08
KRG91253	Soybean	nucleus	75.61	77.73
Solyc01g079690.2.1	Tomato	nucleus	69.81	77.39
CDY18840	Canola	nucleus	72.44	73.78
AT3G06010.1	Thale cress	nucleus	73.35	73.41
Bra040237.1-P	Field mustard	nucleus	72.44	72.64
AT5G19310.1	Thale cress	nucleus	67.0	69.45
TraesCS1A01G087900.1	Wheat	nucleus	55.48	67.7
Zm00001d024816_P007	Maize	cytosol	63.83	63.42
Os05t0144300-01	Rice	nucleus	64.37	62.94
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.74	62.38
Zm00001d006798_P002	Maize	nucleus	63.1	62.37
TraesCS1B01G106900.4	Wheat	nucleus	63.01	61.23
TraesCS1D01G089200.2	Wheat	nucleus	63.01	61.13
GSMUA_Achr6P20210_001	Banana	nucleus	72.98	54.91
GSMUA_Achr8P06840_001	Banana	nucleus	66.09	52.83
VIT_04s0023g01610.t01	Wine grape	cytosol	22.67	32.94
VIT_05s0020g01780.t01	Wine grape	nucleus	28.29	28.89
VIT_01s0010g02080.t01	Wine grape	cytosol	18.4	27.88
VIT_15s0021g02180.t01	Wine grape	cytosol	19.13	24.68
VIT_04s0008g05880.t01	Wine grape	nucleus	24.21	18.14
VIT_06s0009g03750.t01	Wine grape	nucleus	27.2	17.02
VIT_08s0007g09020.t01	Wine grape	nucleus	23.66	16.76
VIT_15s0046g02290.t01	Wine grape	plastid	32.09	15.64
VIT_08s0007g06370.t01	Wine grape	nucleus	25.29	13.6
VIT_01s0011g01480.t01	Wine grape	nucleus	25.11	12.84
VIT_05s0020g02020.t01	Wine grape	nucleus	26.47	10.92

Protein Annotations

EntrezGene:100264840	wikigene:100264840	MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:AM433721
ProteinID:CAN75984	ProteinID:CAN75984.1	ProteinID:CAN75986	ProteinID:CAN75986.1	ProteinID:CCB50397	ProteinID:CCB50397.1
ncoils:Coil	UniProt:F6HDM6	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0042393	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	EntrezGene:LOC100264840	wikigene:LOC100264840	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF14619	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873
SMART:SM00487	SMART:SM00490	SMART:SM01314	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
InterPro:SnAC	UniParc:UPI00019831C1	ArrayExpress:VIT_05s0020g02960	EnsemblPlantsGene:VIT_05s0020g02960	EnsemblPlants:VIT_05s0020g02960.t01	unigene:Vvi.13946
RefSeq:XP_002281240	RefSeq:XP_002281240.2	RefSeq:XP_010649878.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:4705783..4728055

Molecular Weight (calculated)

126002.0 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.643

Length

1103 amino acids

Sequence
(BLAST)

0001: MVAQLESHPT LDPVQKAKTL ICALNLISRN LPLPPDVFNA VSSIYHADDL LDRADVDTLD TPSEKVSDGP GISGGGDLII DLDDALVKQR PNCTSGIELT
0101: KSRENRLQSH IQHRLTQLEE LPSTRGEDLQ TKCLLELYGL KLVELQSKVR SDVSSEYWLR MNCAYPDKQL FDWGMMRLRR PLYGVGDAFA MEADDQFRKK
0201: RDAERLSRLE EEEKNRLETR KRKFFAEILN AVREFQLQVQ ASLKRRKQRN DGVQAWHGRQ RQRATRAEKL RFQALKADDQ EAYMRMVKES KNERLTMLLK
0301: KTNDLLVDLG AAVQRQKGAE QSDGIETLKS PEPDLPDLSA SKSETPDLLP EEDVEILNTD PGPNGKTGDL LEGQRQYNSV IHSIQEKVTE QPAMLQGGEL
0401: RPYQLEGLQW MLSLFNNNLN GILADEMGLG KTIQTISLIA YLVENKGVTG PHLIVAPKAV LPNWVNEFST WAPSIAAVLY DGRLDERKAL REEISGEGKF
0501: NVLITHYDLI MRDKAFLKKI DWHYMIVDEG HRLKNHECAL ARTLVSGYQI QRRLLLTGTP IQNSLQELWS LLNFLLPSIF NSVTNFEEWF NAPFADRSDV
0601: SLTDEEELLI IHRLHHVIRP FILRRKKDEV EKYLPGKTQV ILKCDMSAWQ KAYYHQVTDL GRVGLDTGSG KSKSLQNLSM QLRKCCNHPY LFVGDYNIWQ
0701: KKEEMVRASG KFELLDRLLP KLQKAGHRVL LFSQMTRLMD ILEIYLQMNE IKYLRLDGST KTEERGTKLK QFNAPDSPYF MFLLSTRAGG LGLNLQTADT
0801: VIIFDSDWNP QMDQQAEDRA HRIGQKKEVR VFVLVSVGSI EEVILERAKQ KMGIDAKVIQ AGLFNTTSTA QDRREMLEEI MRRGTNSLGA DVPSEREINR
0901: LAARSDEEFW MFEKMDEERR QKENYRSRLM EEHEVPEWAY STPDGKEEKS KGFEHDASKI TGKRRRKEVV YADSLSDLQW MKAVESGEDI SRLSVKGKRR
1001: EHLPSEANES DSDKIGGEQK VLELRSENVS MTSEGTSEDT FSLAPKRLKS EGANSDQRTG GGSWNGHIPT WQTHTRRRSS YVVQSSSSDA RGQNSNSRGN
1101: GWS

Best Arabidopsis Sequence Match ( AT3G06010.1 )
(BLAST)

0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK

Arabidopsis Description

CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.