Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G087900.1 | Wheat | nucleus | 79.42 | 99.89 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 99.38 | 99.56 |
| Os05t0144300-01 | Rice | nucleus | 80.83 | 81.47 |
| Zm00001d024816_P007 | Maize | cytosol | 78.45 | 80.36 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 79.07 | 79.77 |
| Zm00001d006798_P002 | Maize | nucleus | 78.28 | 79.75 |
| KRH27613 | Soybean | nucleus | 60.86 | 65.1 |
| Solyc01g079690.2.1 | Tomato | nucleus | 56.9 | 65.03 |
| KRH35559 | Soybean | nucleus | 60.16 | 63.81 |
| KRG91253 | Soybean | nucleus | 59.98 | 63.56 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 61.13 | 63.01 |
| CDY18840 | Canola | nucleus | 57.26 | 60.11 |
| AT3G06010.1 | Thale cress | nucleus | 58.22 | 60.07 |
| Bra040237.1-P | Field mustard | nucleus | 57.43 | 59.36 |
| AT5G19310.1 | Thale cress | nucleus | 55.06 | 58.83 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 63.68 | 49.39 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 58.66 | 48.33 |
| TraesCS7D01G069700.1 | Wheat | cytosol | 22.16 | 32.35 |
| TraesCS4D01G053600.2 | Wheat | cytosol | 22.52 | 30.66 |
| TraesCS2D01G365000.1 | Wheat | cytosol | 21.9 | 30.33 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 26.12 | 26.83 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 25.51 | 25.87 |
| TraesCS2D01G400400.1 | Wheat | cytosol | 19.09 | 24.69 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 17.94 | 23.13 |
| TraesCS3D01G403600.1 | Wheat | nucleus | 22.08 | 20.44 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 22.34 | 18.08 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 21.99 | 16.73 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 24.8 | 16.32 |
| TraesCS6D01G039800.1 | Wheat | nucleus, plastid | 30.96 | 15.91 |
| TraesCS7D01G531100.1 | Wheat | nucleus | 23.39 | 12.25 |
| TraesCS2D01G234200.1 | Wheat | nucleus | 22.78 | 11.53 |
| TraesCS7D01G206700.2 | Wheat | nucleus | 31.49 | 10.63 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | EnsemblPlantsGene:TraesCS1D01G089200 |
| EnsemblPlants:TraesCS1D01G089200.2 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:-:75103678..75119970
Molecular Weight (calculated)
129082.0 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.606
Length
1137 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAASVDAAAA VAAPAPPPPV AAPEEAGGGD AEQARILIGA LNLLSRNLPL PPAVLRAVSS IYHGGEDADQ EEEEEEGAEG PSLVGDEGGE GDPADAVDAA
0101: EVRAGASPLC GAFRLDALAS CSSMGTLVPG FGLEATLIQE FEDSIYRNQM MHMSSSKLTA LKEERFNTCI QHRLSELEGL PSTRGEDLQM KCLLELYGLK
0201: LLDLQKKVRS DVNAEYWLHK KCAHPEKQLF DWGMMRIRYP FTMYGIGDGF SMDTDDIHRK KRFTERISKL EEEEKNQAET RKRRFFTEIL NAAREYQVQT
0301: SATYKRRKQR NDGVQAWHVR ARQRINRLEK SRLQVLKAGD QEAYMRMVEE SKNERLTMLL DKTNELLEGI GKAVQRQKDA EHVSRPEGSE DSESDESPEE
0401: SPSDDDADTH GSANTSKFNA AGRRLDSTVH SIEEKVTEQP SALVGGELRP YQLEGLQWML SLFNNNLNGI LADEMGLGKT IQTIALIAYL LEKKEVTGPH
0501: LIVAPKAVLP NWSNEFKTWA PSIGTILYDG RPDERKSLRE TNFGGQFNVL LTHYDLILKD KKFLKKVHWH YLIVDEGHRL KNHECALART LVSGYLIRRR
0601: LLLTGTPIQN SLQELWSLLN FILPNIFNSS GNFEEWFNAP FACDVSINDE EELLIIHRLH QVLRPFLLRR KKDEVEKYLP SKTQVILKCD FSAWQKAYYE
0701: QVASKGKVAL GSGLKPKAVA NLSMQLRKCC NHPYLFVEQY NMYQREEIVR ASGKFELLDR LLPKLHRAGH RVLLFSQMTR LLNILEVYLQ MYNFKYMRLD
0801: GSTKTEERGK LLADFNKKDS EYFIFLLSTR AGGLGLNLQT ADTVIIFDSD WNPQMDQQAE DRAHRIGQKN EVRVFVLVSV GSIEEEILDR AKQKMGIDAK
0901: VIQAGLFNNT STAQDRKALL QEILKRGTST LGTDIPSERE INRLAARTEE EFWLFEKMDE ERRRRENYKS RLMQGPEVPE WVFDISETLA EKLLAEEAKN
1001: PVINTKRRRK EVVYSDSYVD QWMKSDEVYE DIPKMTPRAK RSAYLSDIQE VDLHDRAKRL KYSDSADGAG NSTWTPEKGR PGVSSYSKDE NEDDNDEDEV
1101: TAGGLQQGGS FTWNTLRRKR SSHSTNPSSD PKGRSAF
0101: EVRAGASPLC GAFRLDALAS CSSMGTLVPG FGLEATLIQE FEDSIYRNQM MHMSSSKLTA LKEERFNTCI QHRLSELEGL PSTRGEDLQM KCLLELYGLK
0201: LLDLQKKVRS DVNAEYWLHK KCAHPEKQLF DWGMMRIRYP FTMYGIGDGF SMDTDDIHRK KRFTERISKL EEEEKNQAET RKRRFFTEIL NAAREYQVQT
0301: SATYKRRKQR NDGVQAWHVR ARQRINRLEK SRLQVLKAGD QEAYMRMVEE SKNERLTMLL DKTNELLEGI GKAVQRQKDA EHVSRPEGSE DSESDESPEE
0401: SPSDDDADTH GSANTSKFNA AGRRLDSTVH SIEEKVTEQP SALVGGELRP YQLEGLQWML SLFNNNLNGI LADEMGLGKT IQTIALIAYL LEKKEVTGPH
0501: LIVAPKAVLP NWSNEFKTWA PSIGTILYDG RPDERKSLRE TNFGGQFNVL LTHYDLILKD KKFLKKVHWH YLIVDEGHRL KNHECALART LVSGYLIRRR
0601: LLLTGTPIQN SLQELWSLLN FILPNIFNSS GNFEEWFNAP FACDVSINDE EELLIIHRLH QVLRPFLLRR KKDEVEKYLP SKTQVILKCD FSAWQKAYYE
0701: QVASKGKVAL GSGLKPKAVA NLSMQLRKCC NHPYLFVEQY NMYQREEIVR ASGKFELLDR LLPKLHRAGH RVLLFSQMTR LLNILEVYLQ MYNFKYMRLD
0801: GSTKTEERGK LLADFNKKDS EYFIFLLSTR AGGLGLNLQT ADTVIIFDSD WNPQMDQQAE DRAHRIGQKN EVRVFVLVSV GSIEEEILDR AKQKMGIDAK
0901: VIQAGLFNNT STAQDRKALL QEILKRGTST LGTDIPSERE INRLAARTEE EFWLFEKMDE ERRRRENYKS RLMQGPEVPE WVFDISETLA EKLLAEEAKN
1001: PVINTKRRRK EVVYSDSYVD QWMKSDEVYE DIPKMTPRAK RSAYLSDIQE VDLHDRAKRL KYSDSADGAG NSTWTPEKGR PGVSSYSKDE NEDDNDEDEV
1101: TAGGLQQGGS FTWNTLRRKR SSHSTNPSSD PKGRSAF
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.