CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024816_P007	Maize	cytosol	94.5	95.95
Zm00001d006798_P002	Maize	nucleus	89.97	90.86
TraesCS1A01G087900.1	Wheat	nucleus	67.88	84.62
Os05t0144300-01	Rice	nucleus	82.52	82.45
TraesCS1B01G106900.4	Wheat	nucleus	79.86	79.3
TraesCS1D01G089200.2	Wheat	nucleus	79.77	79.07
Solyc01g079690.2.1	Tomato	nucleus	57.41	65.03
KRH35559	Soybean	nucleus	61.49	64.65
KRG91253	Soybean	nucleus	61.4	64.49
KRH27613	Soybean	nucleus	60.6	64.25
VIT_05s0020g02960.t01	Wine grape	nucleus	62.38	63.74
CDY18840	Canola	nucleus	58.03	60.39
AT3G06010.1	Thale cress	nucleus	58.92	60.25
Bra040237.1-P	Field mustard	nucleus	58.21	59.64
AT5G19310.1	Thale cress	nucleus	55.9	59.21
GSMUA_Achr6P20210_001	Banana	nucleus	65.66	50.48
GSMUA_Achr8P06840_001	Banana	nucleus	58.65	47.9
EER97913	Sorghum	cytosol	22.63	32.78
EER93549	Sorghum	cytosol	22.72	30.62
KXG32501	Sorghum	nucleus	25.55	26.02
OQU93492	Sorghum	cytosol	18.37	22.82
KXG33813	Sorghum	nucleus	22.45	21.96
KXG26914	Sorghum	nucleus	18.72	21.73
KXG19483	Sorghum	cytosol	22.54	19.18
OQU92590	Sorghum	nucleus	22.45	18.01
KXG36860	Sorghum	nucleus	25.73	16.79
OQU84199	Sorghum	nucleus	30.52	16.22
OQU85588	Sorghum	nucleus	23.69	13.17
KXG36264	Sorghum	nucleus	23.51	11.92
OQU76185	Sorghum	nucleus	32.48	9.04

Protein Annotations

MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:8069479	UniProt:C5YZZ8	ncoils:Coil
EnsemblPlants:EES19009	ProteinID:EES19009	ProteinID:EES19009.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0042393	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873	SMART:SM00487	SMART:SM00490	SMART:SM01314
InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3009G040600	SUPFAM:SSF52540	unigene:Sbi.3491	InterPro:SnAC
UniParc:UPI0001A88C01	RefSeq:XP_002440579.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:3898155..3908257

Molecular Weight (calculated)

128446.0 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.640

Length

1127 amino acids

Sequence
(BLAST)

0001: MAASVDAAAA AVAVAVAVAP PPAVEESAGA VEQARTLIGA LNLLSRNLPL PPDVLRAVSS IYHDGGAGEE EEEEEEEEEE GEEQREAEKE GDKEMAAAAD
0101: GVAEDKEDPA DGATTKGGSL IEELEDAIYK NQKAPISYSE LAALKEGRFN ASIQHRLAEL EGLPSTRGED LQMKCLLELY GLKLLDLQKK VRSDISAEYW
0201: LHKKCAYPER QLFDWGLMRI QYPLSMYGIG DILSMDADEV HRKKRFTERM SRLEEEEKNQ ADIRKRKFFA EILNASREHQ VQLATTFKQR KQRNDGVQAW
0301: HVRARQRISR QEKSRLNLLK IGDQEAYMKM VEESKNERLK MLLDKTNELL EGIGKAVQRQ KDAEHVSQPE GSEVPKGSES EDCSGVKSES PGESPSDDDA
0401: DFAGPADESK FNAGRRLDFT VHSIEEKVTE QPSALEGGEL RPYQLEGLQW MLSLFNNNLN GILADEMGLG KTIQTIALIA YLLEKKEVAG PHLIIAPKAV
0501: LPNWSNEFKT WAPSIGTILY DGRPEERKLL REKNFDGLQF NVLLTHYDLI LKDKKFLKKV NWHYLIVDEG HRLKNHECAL ARTLVSGYQI RRRLLLTGTP
0601: IQNSLQELWS LLNFILPNIF NSSQNFEEWF NAPFACDVSL NDEEQLLIIH RLHQVLRPFL LRRKKDEVEK YLPVKTQVIL KCDMSAWQKA YYEQVTSREK
0701: VALGSGLRSK ALQNLSMQLR KCCNHPYLFV EHYNMYQREE IVRASGKFEL LDRLLPKLQR AGHRVLLFSQ MTKLLDVLEV YLQMYNFKYM RLDGSTKTEE
0801: RGRLLADFNK KDSEYFMFLL STRAGGLGLN LQTADTVIIF DSDWNPQMDQ QAEDRAHRIG QKNEVRVFVL VSVGSIEEEI LDRAKQKMGI DAKVIQAGLF
0901: NTTSTAQDRR ALLQEILRRG TSSLGTDIPS EREINRLAAR TDEEFWLFEK MDEERRLREN YKSRLMDGNE VPDWVFANND LPKRTVADEF QNIIVGAKRR
1001: RKEVVYSDSF GDQWMKSDEG FEDVPKATPR PKRTAYSSDL QVEFSERRKR PRSVENSADG ASNPTWTPDK GRAGVSSYSK DETEDDGEDE VITSGLQKGN
1101: SFTWNTLGRR RSSHFSSTSD SKGRPSF

Best Arabidopsis Sequence Match ( AT3G06010.1 )
(BLAST)

0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK

Arabidopsis Description

CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.