Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040237.1-P | Field mustard | nucleus | 90.83 | 91.0 |
| CDY18840 | Canola | nucleus | 89.38 | 90.95 |
| AT5G19310.1 | Thale cress | nucleus | 76.32 | 79.04 |
| KRH35559 | Soybean | nucleus | 71.42 | 73.41 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 73.41 | 73.35 |
| KRG91253 | Soybean | nucleus | 70.96 | 72.88 |
| KRH27613 | Soybean | nucleus | 69.33 | 71.87 |
| Solyc01g079690.2.1 | Tomato | nucleus | 63.34 | 70.15 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 52.72 | 64.27 |
| Zm00001d024816_P007 | Maize | cytosol | 60.16 | 59.73 |
| Os05t0144300-01 | Rice | nucleus | 60.44 | 59.04 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.25 | 58.92 |
| Zm00001d006798_P002 | Maize | nucleus | 59.35 | 58.6 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 59.98 | 58.24 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 60.07 | 58.22 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 66.7 | 50.14 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 61.16 | 48.84 |
| AT5G66750.1 | Thale cress | cytosol | 22.96 | 33.12 |
| AT3G06400.3 | Thale cress | nucleus | 27.4 | 28.57 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 19.06 | 27.52 |
| AT5G18620.2 | Thale cress | nucleus | 26.77 | 27.52 |
| AT2G44980.2 | Thale cress | cytosol | 19.69 | 24.74 |
| AT4G31900.1 | Thale cress | nucleus | 21.96 | 20.13 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 23.5 | 18.37 |
| AT2G13370.2 | Thale cress | nucleus | 27.13 | 17.34 |
| AT3G57300.2 | Thale cress | cytosol | 22.96 | 16.43 |
| AT2G46020.3 | Thale cress | plastid | 30.67 | 15.41 |
| AT3G12810.1 | Thale cress | nucleus | 25.32 | 13.58 |
| AT5G44800.1 | Thale cress | nucleus | 24.14 | 11.97 |
| AT2G28290.5 | Thale cress | nucleus | 32.49 | 10.01 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:819772 | ProteinID:AAF23228.1 | ProteinID:AEE74329.1 |
| ArrayExpress:AT3G06010 | EnsemblPlantsGene:AT3G06010 | RefSeq:AT3G06010 | TAIR:AT3G06010 | RefSeq:AT3G06010-TAIR-G | EnsemblPlants:AT3G06010.1 |
| TAIR:AT3G06010.1 | Symbol:ATCHR12 | Unigene:At.40578 | ncoils:Coil | UniProt:F4J9M5 | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006325 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009414 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010078 |
| GO:GO:0010231 | GO:GO:0010492 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016787 | GO:GO:0040007 |
| GO:GO:0040008 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | RefSeq:NP_187252.2 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009073 | PO:PO:0020030 | PO:PO:0020041 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 | SMART:SM01314 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | UniParc:UPI00018C5020 | SEG:seg | : |
Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
Coordinates
chr3:-:1802141..1807530
Molecular Weight (calculated)
126742.0 Da
IEP (calculated)
6.498
GRAVY (calculated)
-0.677
Length
1102 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.