Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024816_P007 | Maize | cytosol | 90.77 | 91.26 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 90.86 | 89.97 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 68.1 | 84.07 |
| Os05t0144300-01 | Rice | nucleus | 82.53 | 81.65 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 79.93 | 78.59 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 79.75 | 78.28 |
| Solyc01g079690.2.1 | Tomato | nucleus | 57.53 | 64.52 |
| KRH27613 | Soybean | nucleus | 61.38 | 64.44 |
| KRG91253 | Soybean | nucleus | 61.74 | 64.21 |
| KRH35559 | Soybean | nucleus | 61.65 | 64.18 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 62.37 | 63.1 |
| CDY18840 | Canola | nucleus | 57.8 | 59.56 |
| AT3G06010.1 | Thale cress | nucleus | 58.6 | 59.35 |
| AT5G19310.1 | Thale cress | nucleus | 56.27 | 59.02 |
| Bra040237.1-P | Field mustard | nucleus | 57.97 | 58.82 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 65.77 | 50.07 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 58.78 | 47.54 |
| Zm00001d007978_P003 | Maize | cytosol | 22.4 | 31.73 |
| Zm00001d033827_P006 | Maize | cytosol | 23.21 | 30.54 |
| Zm00001d040831_P021 | Maize | nucleus | 25.81 | 25.71 |
| Zm00001d009312_P028 | Maize | nucleus | 25.81 | 25.49 |
| Zm00001d048552_P005 | Maize | cytosol | 18.46 | 22.79 |
| Zm00001d002656_P002 | Maize | nucleus | 18.28 | 20.84 |
| Zm00001d045109_P008 | Maize | cytosol | 22.49 | 18.82 |
| Zm00001d015595_P001 | Maize | cytosol | 3.23 | 18.27 |
| Zm00001d029180_P002 | Maize | nucleus | 23.12 | 16.92 |
| Zm00001d022405_P051 | Maize | nucleus | 25.99 | 16.82 |
| Zm00001d047471_P002 | Maize | nucleus | 22.94 | 16.34 |
| Zm00001d014977_P002 | Maize | nucleus | 30.11 | 15.53 |
| Zm00001d007089_P003 | Maize | nucleus | 23.84 | 15.31 |
| Zm00001d051507_P007 | Maize | nucleus | 23.57 | 12.76 |
| Zm00001d017660_P021 | Maize | nucleus | 23.48 | 12.71 |
| Zm00001d006428_P002 | Maize | nucleus | 23.57 | 12.01 |
| Zm00001d021541_P002 | Maize | nucleus | 23.57 | 11.82 |
| Zm00001d037346_P007 | Maize | nucleus | 31.63 | 9.26 |
Protein Annotations
| EntrezGene:103647820 | MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A1D6F0Y2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0016787 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | ProteinID:ONM25137.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | UniParc:UPI0004DE7CA3 |
| EnsemblPlantsGene:Zm00001d006798 | EnsemblPlants:Zm00001d006798_P002 | EnsemblPlants:Zm00001d006798_T002 | SEG:seg | : | : |
Description
Probable ATP-dependent DNA helicase CHR12
Coordinates
chr2:-:216935090..216965626
Molecular Weight (calculated)
127269.0 Da
IEP (calculated)
6.989
GRAVY (calculated)
-0.628
Length
1116 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSASVDAASA VAVPAVPPAV EEAGGAVEQA RTLIAALNLL SRNLPLPPDV MRAVSSIYHD GGAGDRAGEE EKGGDEEMPA ADGAAEGNCS VYAAGGATEG
0101: TTLIEELEDA ILKNQRTPIT YSELAAIREG RFNASIQHRL AELEGLPSTR GEDLQMKCLL ELYGLKLLDL QKKVRSDISA EYWLQKKCAY PERQLFDWGM
0201: MRIRHPFSMY GIGDSFSVDV DDVHRRKRFT ERMSRLEEEG KNQADIRKRK FFAEILNASR EHQVQLGTTF KQRKQRNDGV MAWHVRARQR ITRQEKSRIN
0301: LLKTGDQEAY MRMVEESKNE RLKMLLDKTN ELLEGIGKAV QRQKDAEHVS KPEGGSEVPK GSESEDCSQI SGIKSESAEE SPSDDDGDLP GPADESKFNA
0401: GRRLDFTVHS IEEKVTEQPS ALEGGELRPY QLEGLQWMLS LFNNNLNGIL ADEMGLGKTI QTIALIAYLL EKKEVAGPHL IIAPKAVLPN WSNEFKTWAP
0501: SIGTILYDGR PEERRLLRDK NFDGEQFNVL LTHYDLILKD KKFLKKVHWH YLIVDEGHRL KNHECALART LVSGYMIRRR LLLTGTPIQN SLQELWSLLN
0601: FILPNIFNSS QNFEEWFNAP FACDVSLNDE EQLLIIHRLH QVLRPFLLRR KKDEVEKYLP VKTQVILKCD MSAWQKAYYE QVTSREKVAL GYGIRKKALQ
0701: NLSMQLRKCC NHPYLFVEHY NMYQREEIVR ASGKFELLDR LLPKLQRAGH RVLLFSQMTK LLDVLEIYLQ MYNFKYMRLD GSTKTEERGR LLADFNKKNS
0801: EYFMFLLSTR AGGLGLNLQT ADTVIIFDSD WNPQMDQQAE DRAHRIGQKN EVRVFVLVSV GSIEEEILDR AKQKMGIDAK VIQAGLFNTT STAQDRRALL
0901: QEILRRGTSS LGTDIPSERE INRLAARNDE EFRLFEKMDE ERRLKENYKS RLMDGNEVPD WVFANDNETL RKKTVADEFR NIIVGSKRRR KEVVYSDSFG
1001: DQWMKSDEGF EEIAKMTPRV KRTAYSPDIQ VEYNERRKRP KSVENSADGA SNPTRTPDKG RAGVSSYSKD ETEDDGEDEV ITSGLQKGNS FTWKTLGRKR
1101: SSHLSSSSDS KGRPSF
0101: TTLIEELEDA ILKNQRTPIT YSELAAIREG RFNASIQHRL AELEGLPSTR GEDLQMKCLL ELYGLKLLDL QKKVRSDISA EYWLQKKCAY PERQLFDWGM
0201: MRIRHPFSMY GIGDSFSVDV DDVHRRKRFT ERMSRLEEEG KNQADIRKRK FFAEILNASR EHQVQLGTTF KQRKQRNDGV MAWHVRARQR ITRQEKSRIN
0301: LLKTGDQEAY MRMVEESKNE RLKMLLDKTN ELLEGIGKAV QRQKDAEHVS KPEGGSEVPK GSESEDCSQI SGIKSESAEE SPSDDDGDLP GPADESKFNA
0401: GRRLDFTVHS IEEKVTEQPS ALEGGELRPY QLEGLQWMLS LFNNNLNGIL ADEMGLGKTI QTIALIAYLL EKKEVAGPHL IIAPKAVLPN WSNEFKTWAP
0501: SIGTILYDGR PEERRLLRDK NFDGEQFNVL LTHYDLILKD KKFLKKVHWH YLIVDEGHRL KNHECALART LVSGYMIRRR LLLTGTPIQN SLQELWSLLN
0601: FILPNIFNSS QNFEEWFNAP FACDVSLNDE EQLLIIHRLH QVLRPFLLRR KKDEVEKYLP VKTQVILKCD MSAWQKAYYE QVTSREKVAL GYGIRKKALQ
0701: NLSMQLRKCC NHPYLFVEHY NMYQREEIVR ASGKFELLDR LLPKLQRAGH RVLLFSQMTK LLDVLEIYLQ MYNFKYMRLD GSTKTEERGR LLADFNKKNS
0801: EYFMFLLSTR AGGLGLNLQT ADTVIIFDSD WNPQMDQQAE DRAHRIGQKN EVRVFVLVSV GSIEEEILDR AKQKMGIDAK VIQAGLFNTT STAQDRRALL
0901: QEILRRGTSS LGTDIPSERE INRLAARNDE EFRLFEKMDE ERRLKENYKS RLMDGNEVPD WVFANDNETL RKKTVADEFR NIIVGSKRRR KEVVYSDSFG
1001: DQWMKSDEGF EEIAKMTPRV KRTAYSPDIQ VEYNERRKRP KSVENSADGA SNPTRTPDKG RAGVSSYSKD ETEDDGEDEV ITSGLQKGNS FTWKTLGRKR
1101: SSHLSSSSDS KGRPSF
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.