Factsheet for Zm00001d006428_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36264	Sorghum	nucleus	90.73	89.34
Zm00001d021541_P002	Maize	nucleus	89.77	88.36
Os07t0497100-01	Rice	nucleus	71.05	68.88
TraesCS2B01G251900.1	Wheat	nucleus	69.91	68.32
TraesCS2D01G234200.1	Wheat	nucleus	70.09	68.31
TraesCS2A01G227900.1	Wheat	nucleus	69.91	68.2
CDY67658	Canola	cytosol, nucleus	26.67	51.73
CDY68094	Canola	nucleus	27.21	47.79
VIT_01s0011g01480.t01	Wine grape	nucleus	46.03	46.73
KRH42374	Soybean	nucleus	45.21	45.75
GSMUA_Achr9P11210_001	Banana	nucleus	41.37	44.02
KRH58495	Soybean	nucleus	45.84	43.0
GSMUA_Achr6P29570_001	Banana	nucleus	41.28	42.2
AT5G44800.1	Thale cress	nucleus	42.37	41.75
Bra027574.1-P	Field mustard	nucleus	41.83	41.22
Solyc02g068560.2.1	Tomato	nucleus	44.2	40.62
Zm00001d007978_P003	Maize	cytosol	9.95	27.66
Zm00001d033827_P006	Maize	cytosol	10.41	26.89
Zm00001d045109_P008	Maize	cytosol	15.84	26.01
Zm00001d048552_P005	Maize	cytosol	10.27	24.89
Zm00001d040831_P021	Maize	nucleus	12.51	24.46
Zm00001d009312_P028	Maize	nucleus	12.47	24.16
Zm00001d024816_P007	Maize	cytosol	12.15	23.96
Zm00001d006798_P002	Maize	nucleus	12.01	23.57
Zm00001d002656_P002	Maize	nucleus	9.41	21.04
Zm00001d022405_P051	Maize	nucleus	15.98	20.3
Zm00001d007089_P003	Maize	nucleus	14.61	18.42
Zm00001d015595_P001	Maize	cytosol	1.51	16.75
Zm00001d029180_P002	Maize	nucleus	11.32	16.26
Zm00001d047471_P002	Maize	nucleus	11.46	16.02
Zm00001d051507_P007	Maize	nucleus	13.2	14.02
Zm00001d017660_P021	Maize	nucleus	13.11	13.92
Zm00001d014977_P002	Maize	nucleus	12.56	12.71
Zm00001d037346_P007	Maize	nucleus	14.34	8.24

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.20.920.10	EntrezGene:103647692	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.40.50.10810
Gene3D:3.40.50.300	UniProt:A0A1D6EW42	InterPro:Bromodomain-like_sf	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain
InterPro:DUF1087	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR000953	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR017877	InterPro:IPR019787	InterPro:IPR036427	InterPro:IPR038718	InterPro:Myb-like_dom
ProteinID:ONM23785.1	ProteinID:ONM23791.1	ProteinID:ONM23792.1	ProteinID:ONM23795.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF00385	PFAM:PF00628	PFAM:PF06465	ScanProsite:PS01359	PFscan:PS50013
PFscan:PS50016	PFscan:PS50090	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF939
SMART:SM00249	SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01147	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF46689	SUPFAM:SSF52540	SUPFAM:SSF54160	SUPFAM:SSF57903	UniParc:UPI0004DEA478
InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d006428	EnsemblPlants:Zm00001d006428_P002	EnsemblPlants:Zm00001d006428_T002	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	SEG:seg	:	:	:	:

Description

PHD-transcription factor 31Protein CHROMATIN REMODELING 4

Coordinates

chr2:+:207695637..207743821

Molecular Weight (calculated)

243509.0 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.651

Length

2190 amino acids

Sequence
(BLAST)

0001: MKERSSLCES AADGNWGLKY KRKRSKLTVS PSNENEATSP TSDSPMSHGS TKKKLKHDTN ISPSAKKIRG HDGYFFECVE CDLGGNLLCC DSCPRVYHLE
0101: CLNPPLKRLP PGKWQCPRCR PKKGSLKMLG NAEVGTSKHE KSTRTYAGTT SGSPPSHTKV SFKTRNSTQD KTGSKEQGKQ SSGGTMMGGD PNNEVEKKNT
0201: LILHLKKHSM KELSENAKPL KSKFVGEPSE EKIVKHGSVL KLKKHSDRMD LSPNKSKSRG QNSQRESKRP GTKKLKYSMS DDDSVSSSEP STSLDNNEPP
0301: PKRKPSDGKA PSSSTKKGKK KVKFIEKRHS EEQCVVGDKT TTSQEDQQVD RILGCRLQTN KINPLSHASF KQFESANLQV EDMALPLASA GIPNKSHDGT
0401: ESSRNGTVED ICADESANHS GHSLEMQKDR NSKSHENESC KREQGNNILS ICFVDETSIM KDDQVGRENV AASKKGEDAT YDLPAEKDDT KLPVTRADAM
0501: TRTNQEHTDE SKQHGKIKQI TDKDYNDAGY EFLIKWVGKS NIHNTWVSES EVKILAKRKL ENYKTKYGTS LINICKEQWC QPQRVIALRA SVDEVEEALI
0601: KWCGLSYDEC TWERLDEPTL MKYSHLVTQF KNFECQALDK DVVKDYANTR NRHELNVLAD QPKELKGGML FPHQLEALNW LRKCWHKSKN VILADEMGLG
0701: KTVSACAFLS SLCCEFKINL PCLVLVPLST MPNWMAEFAS WAPHLNVVEY HGSARSRSII RQYEWHAGDS SQIGKTKRSY KLNVLLTTYE MVLVDAAYLR
0801: SVSWEVLVVD EGHRLKNSSS KLFSLLNSLS FQHRVLLTGT PLQNNIGEMY NLLNFLQPTS FPSLSSFEEK FNDLTTAEKV EELKKLVAPH MLRRLKKDAM
0901: QNIPPKTERM VPVELTSIQA EYYRAMLTKN YQVLRNIGKG GAHQSLLNIV MQLRKVCNHP YLIHGTEPES GSPEFLHEMR IKASAKLTLL HSMLKILHKE
1001: GHRVLIFSQM TKLLDILEDY LTLEFGPKTF ERVDGSVSVA ERQAAIARFN QDKTRFVFLL STRSCGLGIN LATADTVIIY DSDFNPHADI QAMNRAHRIG
1101: QSNRLLVYRL VVRASVEERI LQLAKKKLML DQLFVNKSES QKEVEDIIRW GTEELFGSSD SVDGKDSNEA SGSVADVEFK HRRKTGGLGD VYEDKCIGGS
1201: TKLVWDENAI LKLLDRSNLP SSVAESTDGD LDNDMLGTVK SIDWNDELND HPGTNEDIAP IDNDGSELAS ESKQGATNRL EENEWDKLLR VRWEQYQIEE
1301: EASLGRGKRL RKAVSYRETF ATLPNEALSE GSDEGDEPKR EYTAAGLVLK EKYGKLRARQ KERIAQRHII KNYAVDNLEE FMTPYISIAN EPAENPLIIV
1401: EDPSSSQLCG AKCFSESTGE MRQSSKKSRR YSEIPQDLYA RIPDNAASSK DNSKATDVFN PGTPNHLLPV LGLCAPNADQ VNSYKNSICA PSIKEHKRAS
1501: GDVVNKQLST PADHSNELRN EVQSASDKVI FPGASEEALR RISNMIPDNY FPFSHIPPIS GKAVDPVEYI GASNASFQGK LGLPNFSLED NTPLKHIKPI
1601: PDIFPYLSLG AHKDYIRSSV PELPDSSLLP NFMADIAGTS KQKSFMSGPL PGLGLSPGQP IHLTMPDNHK KVLDNIMMRA QYASNKFLKK RSKLDYWSED
1701: ELDALWIGVR RHGRGNWDAM LRDPKLKFLN NRTSEELASR WILEEQKIID EPMSAATRRS NSTAFPGISD AMMSRALNES NLSKMRMEQP KLQSHVTDIQ
1801: LGSSDILSRF PHVEAPNYIN SGEGGPPQIP WQDFKHRSSY GGDFPGGAFD KLEKPDVGLI PPFMPNPFMT DSIDSLPINR KNNSSIPRSE IRSSSRENIL
1901: FSGVSDGQIN LLHEMQRHVR SGKQPIEIKL NHIDHSNPQL GNASDLGGLK SNKLPHWLQE AVRAPASSKP PERGLPATVS AIAQSMCLLL GEQEPSIPPF
2001: LILGTPLSPP KDPRINSKKR KLRKAHQSTS HVGDCIATQA PPSVKASAAP LAVDCNDGAP SLNLNSALLS SSAVSKKLDE LPPTFKESNQ TMDGSEAVAG
2101: KLEAPEIGCQ VTGSSPVDDK ARESSGSPVK DTPDAGVRLQ GSDNSAMAFS ALPLEAPVTS SRAEPVACDG SDMKEDIPLD AESNGNLEER

Best Arabidopsis Sequence Match ( AT5G44800.1 )
(BLAST)

0001: MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA
0101: CLNPPLKRIP NGKWICPKCS PNSEALKPVN RLDAIAKRAR TKTKKRNSKA GPKCERASQI YCSSIISGEQ SSEKGKSISA EESKSTGKEV YSSPMDGCST
0201: AELGHASADD RPDSSSHGED DLGKPVIPTA DLPSDAGLTL LSCEDLSESK LSDTEKTHEA PVEKLEHASS EIVENKTVAE METGKGKRKK RKRELNDGES
0301: LERCKTDKKR AKKSLSKVGS SSQTTKSPES SKKKKKKNRV TLKSLSKPQS KTETPEKVKK LPKEERRAVR ATNKSSSCLE DTNSLPVGNL QVHRVLGCRI
0401: QGLTKTSLCS ALSDDLCSDN LQATDQRDSL VQDTNAELVV AEDRIDSSSE TGKSSRDSRL RDKDMDDSAL GTEGMVEVKE EMLSEDISNA TLSRHVDDED
0501: MKVSETHVSV ERELLEEAHQ ETGEKSTVAD EEIEEPVAAK TSDLIGETVS YEFLVKWVDK SNIHNTWISE AELKGLAKRK LENYKAKYGT AVINICEDKW
0601: KQPQRIVALR VSKEGNQEAY VKWTGLAYDE CTWESLEEPI LKHSSHLIDL FHQYEQKTLE RNSKGNPTRE RGEVVTLTEQ PQELRGGALF AHQLEALNWL
0701: RRCWHKSKNV ILADEMGLGK TVSASAFLSS LYFEFGVARP CLVLVPLSTM PNWLSEFSLW APLLNVVEYH GSAKGRAIIR DYEWHAKNST GTTKKPTSYK
0801: FNVLLTTYEM VLADSSHLRG VPWEVLVVDE GHRLKNSESK LFSLLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEERF HDLTSAEKVE
0901: ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV PVELTSIQAE YYRAMLTKNY QILRNIGKGV AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SLEFLHDMRI
1001: KASAKLTLLH SMLKVLHKEG HRVLIFSQMT KLLDILEDYL NIEFGPKTFE RVDGSVAVAD RQAAIARFNQ DKNRFVFLLS TRACGLGINL ATADTVIIYD
1101: SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV VRASVEERIL QLAKKKLMLD QLFVNKSGSQ KEFEDILRWG TEELFNDSAG ENKKDTAESN GNLDVIMDLE
1201: SKSRKKGGGL GDVYQDKCTE GNGKIVWDDI AIMKLLDRSN LQSASTDAAD TELDNDMLGS VKPVEWNEET AEEQVGAESP ALVTDDTGEP SSERKDDDVV
1301: NFTEENEWDR LLRMRWEKYQ SEEEAALGRG KRLRKAVSYR EAYAPHTSGP VNESGGEDEK EPEPELKKEY TPAGRALKEK FTKLRERQKN LIARRNSVEE
1401: SLPSGNVDQV TEVANQDEES PTSMDLDDSK ASQQCDAQKR KASSSDPKPD LLSQHHHGAE CLPSLPPNNL PVLGLCAPNF TQSESSRRNY SRPGSRQNRP
1501: ITGPHFPFNL PQTSNLVERE ANDQEPPMGK LKPQNIKEEP FQQPLSNMDG WLPHRQFPPS GDFERPRSSG AAFADFQEKF PLLNLPFDDK LLPRFPFQPR
1601: TMGTSHQDIM ANLSMRKRFE GTGHSMQDLF GGTPMPFLPN MKIPPMDPPV FNQQEKDLPP LGLDQFPSAL SSIPENHRKV LENIMLRTGS GIGHVQKKKT
1701: RVDAWSEDEL DSLWIGIRRH GYGNWETILR DPRLKFSKFK TPEYLAARWE EEQRKFLDSL SSLPSKSSRT DKSTKSSLFP GLPQGIMNRA LHGKYATPPR
1801: FQSHLTDIKL GFGDLASPLP LFEPSDHLGF RSEHFPPMAN LCTDNLPGEP SAGPSERAGT STNIPNEKPF PLNSLGMGNL GSLGLDSLSS LNTLRAEEKR
1901: DAIKRGKLPL FLDMPLPQML DSSNNVFLGR SANPSFLHPN RGLNPSNPMG RDIMGISSSE NKLPHWLRNV VTVPTVKSPE PPTLPPTVSA IAQSVRVLYG
2001: EDSTTIPPFV IPEPPPPAPR DPRHSLRKKR KRKLHSSSQK TTDIGSSSHN AVESSSQGNP QTSATPPLPP PSLAGETSGS SQPKLPPHNL NSTEPLSSEA
2101: IIIPPPEEDS VIAAAPSEAP GPSLEGITGT TKSISLESQS SEPETINQDG DLDPETDEKV ESERTPLHSD EKQEEQESEN ALNKQCEPIE AESQNTNAEE
2201: EAEAQEEDEE SMKMVTGNSL SDD

Arabidopsis Description

CHR4PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.