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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_01s0011g01480.t01 Wine grape nucleus 55.1 60.87
CDY67658 Canola cytosol, nucleus 27.91 58.9
CDY68094 Canola nucleus 29.12 55.65
KRH42374 Soybean nucleus 50.44 55.55
KRH58495 Soybean nucleus 53.21 54.3
AT5G44800.1 Thale cress nucleus 46.75 50.11
Bra027574.1-P Field mustard nucleus 46.2 49.55
GSMUA_Achr9P11210_001 Banana nucleus 39.66 45.92
Zm00001d006428_P002 Maize nucleus 40.62 44.2
KXG36264 Sorghum nucleus 41.21 44.15
Zm00001d021541_P002 Maize nucleus 40.96 43.87
GSMUA_Achr6P29570_001 Banana nucleus 39.15 43.56
Os07t0497100-01 Rice nucleus 40.96 43.2
TraesCS2B01G251900.1 Wheat nucleus 40.16 42.7
TraesCS2A01G227900.1 Wheat nucleus 39.95 42.41
TraesCS2D01G234200.1 Wheat nucleus 39.95 42.37
Solyc08g029120.1.1 Tomato nucleus 10.87 36.69
Solyc01g090650.1.1 Tomato cytosol, nucleus, plastid 8.94 34.75
Solyc02g062780.2.1 Tomato cytosol 9.9 30.61
Solyc02g085390.2.1 Tomato cytosol 9.65 28.36
Solyc01g079690.2.1 Tomato nucleus 11.2 26.83
Solyc06g054560.2.1 Tomato nucleus 11.92 26.77
Solyc02g014770.2.1 Tomato nucleus 8.27 26.69
Solyc01g067390.2.1 Tomato nucleus 11.88 26.57
Solyc06g065730.2.1 Tomato nucleus 15.82 26.24
Solyc12g099910.1.1 Tomato nucleus 15.15 21.15
Solyc04g016370.2.1 Tomato nucleus 11.25 17.41
Solyc03g063220.1.1 Tomato nucleus 11.12 16.48
Solyc01g094800.2.1 Tomato nucleus 12.17 12.97
Solyc11g062010.1.1 Tomato nucleus 13.72 12.26
Protein Annotations
Gene3D:1.10.10.60MapMan:12.4.1.1.5Gene3D:2.40.50.40Gene3D:3.30.40.10Gene3D:3.40.50.10810Gene3D:3.40.50.300
InterPro:Chromo-like_dom_sfInterPro:Chromo/chromo_shadow_domInterPro:Chromo_domainInterPro:DUF1087GO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0009506GO:GO:0046872InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:Homeobox-like_sfInterPro:IPR000953InterPro:IPR001650InterPro:IPR013083InterPro:IPR014001InterPro:IPR017877
InterPro:IPR019787InterPro:IPR038718UniProt:K4B7I8InterPro:Myb-like_domInterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF00385PFAM:PF00628PFAM:PF06465ScanProsite:PS01359PFscan:PS50013
PFscan:PS50016PFscan:PS50090PFscan:PS51192PFscan:PS51194PANTHER:PTHR10799PANTHER:PTHR10799:SF939
SMART:SM00249SMART:SM00298SMART:SM00487SMART:SM00490SMART:SM01147InterPro:SNF2-like_sf
InterPro:SNF2_NSUPFAM:SSF46689SUPFAM:SSF52540SUPFAM:SSF54160SUPFAM:SSF57903EnsemblPlantsGene:Solyc02g068560.2
EnsemblPlants:Solyc02g068560.2.1UniParc:UPI0002767AFDInterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
Protein CHROMATIN REMODELING 4 [Source:Projected from Arabidopsis thaliana (AT5G44800) UniProtKB/Swiss-Prot;Acc:F4KBP5]
Coordinates
chr2:-:38512800..38528023
Molecular Weight (calculated)
264520.0 Da
IEP (calculated)
7.679
GRAVY (calculated)
-0.706
Length
2383 amino acids
Sequence
(BLAST)
0001: MVKENGSPSS KMLNRNWVLK RKRRKLPSGP DVSNDKEKAS KPLDLPSSDS PKSRVKNEIT SSRSSSKKKG NDGYYYECVV CDLGGNLLCC ESCPRTYHIQ
0101: CLDPPLKRIP TGKWECPTCY QKNDTHESVN PLDMVSKRAR TKFTGGKAKN ENKSSGISKI SLIFESSIPG KKRSSGKERT PLSHLSQMEK LGNSSNDVPC
0201: DIEPSHCSLD GAADGSSLHI GADKEKEVPP ADNPVEKEVP PSDTPAEKGV PSADTPLEKP SSSMNDATPF LNMTDSKTND KASEKKPDLP SSDRSPGGEP
0301: VAVSEAASRK DRKRKPNFYN IDSQNKSRSD KGKLVADNTK RSGSKSSKLQ KKRKRVNRQP SVTASNRDRR DIETQLKDEL VSEEGAQPSD LSHEAGKVAA
0401: EPLIYDNNGP SLQQVDRVLA CRVQDDNISC SHDIPGINAN DPALRDSARE EANDGKPSGD VSVVEVGIEY PGSGSQETLD IPDKGKSSKD DTSKDEMHVC
0501: RRSGSRECTE GTGTVKEDSQ GSVSEGAINN NEEDIAVNAD DYLANTQNTS GESNDSTEKN YNDKTKSKDD VTSGTHKVGT AKGKDEMITT DTTSFKKSEE
0601: TVLAKPSTSN SVNVVYEYLV KWVGKSNIHN SWIPESQLKI LAKRKLDNYK AKYGTATINI CDEQWKLPQR IIATRPGMSG SDEVFVRWTG LPYDECTWEK
0701: IEEPVIAKSS HLIDQFNQFE SQALARNATK DDMARKRKER QKNDIVALTE QPKELGGSLF PHQMEALNWL RKCWHKSKNV ILADEMGLGK TISASAFLSS
0801: LYTEFNAALP SLVLVPLSTM PNWMAEFQLW APHLNVVEYH GTAKARAVIR QFEWHSRDQS DLNKRSTSYK FNVLLTTYEM VLVDSTYLRG IPWEVLVVDE
0901: GHRLKNSSSK LFSMLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEEKF NDLTTAEKVE ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV
1001: PVELSSIQAE YYRAMLTKNY QLLRNIGKGI AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SVEFLHEMRI KASGKLTLLH SMLKSLHKEG HRVLIFSQMT
1101: KLLDILEDYL AIEFGQKTYE RVDGSVAVAD RQAAIARFNQ DKSRFVFLLS TRSCGLGINL ATADTVIIYD SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV
1201: VRASVEERIL QLAKRKLMLD QLFVNKSGSQ KEVEDILRWG TEELFSDSSS MAEKDAVENT SNKDDTVPEV EHKRKRTGSL GDVYKDKCTK GSTMIVWDEN
1301: AILKLLDRSN LQSESPDNNE AELENDMLGS VKSLEWNEDG AEEQAGIASD MVVSEDTCVQ NVEKKEDNLA SSSEENEWDK LLRVRWEKYQ SEEEAALGRG
1401: KRLRKAISYR EAYASHPNET LTENAVEGEP VPVPVPEPER EYSQAGRALK EKYAKLRAKQ KERLARRNAI EEASGPMEEQ AGRESLCHLL PPQAHYVNLM
1501: NVSSRNREEK HVVMNLENNS CLKSSETQKN MGDSALRLGK LKHKVNDNID LPSRGHPLAD IPQSSNHAQD MSYIKSVDKQ LLPILGLCAP NAHQVEAPQR
1601: NLSRSNVRQH RQGLGLEFPT IAPPPEISTE MVAKGFPPRF RLPDLPLDPS QQPPKNSLPD SYLPFNPHPR PAMRERCSAG NLQNSCATSS DIQDRTALPK
1701: PFDKPLLPRY PFPAMNMPRP PSALFPNLSL GSRDVNESVR EHPVLPFLPN LKFPPHDAPR FNPQEQEMPP VQGLGHMAPS SSSFPENHWK VLENIMLRTG
1801: LGSGNLLKRR NKLDVWSEDE LDCLWIGVRR HGRGNWDAML RDTKLKFSKY RTPEDLSIRW EEEQLKIMDG PALSAPKPSK PTKVGKSGLF SGISDGMMAR
1901: ALHGCKLNKQ FLPTHLTDMK LGLRDLPSSF PHLEPPERLD LNSKHISHLP TPSADKYRVN IPRDLNAGPS DRLGAPSSFV TESPFLLNSS GSSSLGPLGL
2001: GCQNRFALQK EIDDGASRFV NLPSLLDRSL NISHDSHNNA GGGESSNYPS LPVLDKGQRV SQSKGKEVVE CSSLKNKLPH WLREAVNIPT KLPEPDLPPA
2101: VSAIAQSVRM LYGEENPTIP PFVIPSPPPS QPRDPRLSLK KKKKKKKKKH GLQVMRQFPI DFAGTIDVQG SSIHGESMAG TSSLQDPAFP LLSGVMDRTS
2201: GLPSNEANLN IPPLSVNVNP STRIFPLMKK SSGLSPSPEV LRLVASCVAS GPPIATSSSF LGNMVPLPKS VDQVASSDTQ DSHVAPGPPI ATSPSFLGNM
2301: VPLPKSVDQV ASSDTQDSHE KQETDQTSAP STLGPFQAEK KVETNSRDSS KTQSDSARAR QEEVEEISSE GTVSDHQEDD REP
Best Arabidopsis Sequence Match ( AT5G44800.1 )
(BLAST)
0001: MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA
0101: CLNPPLKRIP NGKWICPKCS PNSEALKPVN RLDAIAKRAR TKTKKRNSKA GPKCERASQI YCSSIISGEQ SSEKGKSISA EESKSTGKEV YSSPMDGCST
0201: AELGHASADD RPDSSSHGED DLGKPVIPTA DLPSDAGLTL LSCEDLSESK LSDTEKTHEA PVEKLEHASS EIVENKTVAE METGKGKRKK RKRELNDGES
0301: LERCKTDKKR AKKSLSKVGS SSQTTKSPES SKKKKKKNRV TLKSLSKPQS KTETPEKVKK LPKEERRAVR ATNKSSSCLE DTNSLPVGNL QVHRVLGCRI
0401: QGLTKTSLCS ALSDDLCSDN LQATDQRDSL VQDTNAELVV AEDRIDSSSE TGKSSRDSRL RDKDMDDSAL GTEGMVEVKE EMLSEDISNA TLSRHVDDED
0501: MKVSETHVSV ERELLEEAHQ ETGEKSTVAD EEIEEPVAAK TSDLIGETVS YEFLVKWVDK SNIHNTWISE AELKGLAKRK LENYKAKYGT AVINICEDKW
0601: KQPQRIVALR VSKEGNQEAY VKWTGLAYDE CTWESLEEPI LKHSSHLIDL FHQYEQKTLE RNSKGNPTRE RGEVVTLTEQ PQELRGGALF AHQLEALNWL
0701: RRCWHKSKNV ILADEMGLGK TVSASAFLSS LYFEFGVARP CLVLVPLSTM PNWLSEFSLW APLLNVVEYH GSAKGRAIIR DYEWHAKNST GTTKKPTSYK
0801: FNVLLTTYEM VLADSSHLRG VPWEVLVVDE GHRLKNSESK LFSLLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEERF HDLTSAEKVE
0901: ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV PVELTSIQAE YYRAMLTKNY QILRNIGKGV AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SLEFLHDMRI
1001: KASAKLTLLH SMLKVLHKEG HRVLIFSQMT KLLDILEDYL NIEFGPKTFE RVDGSVAVAD RQAAIARFNQ DKNRFVFLLS TRACGLGINL ATADTVIIYD
1101: SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV VRASVEERIL QLAKKKLMLD QLFVNKSGSQ KEFEDILRWG TEELFNDSAG ENKKDTAESN GNLDVIMDLE
1201: SKSRKKGGGL GDVYQDKCTE GNGKIVWDDI AIMKLLDRSN LQSASTDAAD TELDNDMLGS VKPVEWNEET AEEQVGAESP ALVTDDTGEP SSERKDDDVV
1301: NFTEENEWDR LLRMRWEKYQ SEEEAALGRG KRLRKAVSYR EAYAPHTSGP VNESGGEDEK EPEPELKKEY TPAGRALKEK FTKLRERQKN LIARRNSVEE
1401: SLPSGNVDQV TEVANQDEES PTSMDLDDSK ASQQCDAQKR KASSSDPKPD LLSQHHHGAE CLPSLPPNNL PVLGLCAPNF TQSESSRRNY SRPGSRQNRP
1501: ITGPHFPFNL PQTSNLVERE ANDQEPPMGK LKPQNIKEEP FQQPLSNMDG WLPHRQFPPS GDFERPRSSG AAFADFQEKF PLLNLPFDDK LLPRFPFQPR
1601: TMGTSHQDIM ANLSMRKRFE GTGHSMQDLF GGTPMPFLPN MKIPPMDPPV FNQQEKDLPP LGLDQFPSAL SSIPENHRKV LENIMLRTGS GIGHVQKKKT
1701: RVDAWSEDEL DSLWIGIRRH GYGNWETILR DPRLKFSKFK TPEYLAARWE EEQRKFLDSL SSLPSKSSRT DKSTKSSLFP GLPQGIMNRA LHGKYATPPR
1801: FQSHLTDIKL GFGDLASPLP LFEPSDHLGF RSEHFPPMAN LCTDNLPGEP SAGPSERAGT STNIPNEKPF PLNSLGMGNL GSLGLDSLSS LNTLRAEEKR
1901: DAIKRGKLPL FLDMPLPQML DSSNNVFLGR SANPSFLHPN RGLNPSNPMG RDIMGISSSE NKLPHWLRNV VTVPTVKSPE PPTLPPTVSA IAQSVRVLYG
2001: EDSTTIPPFV IPEPPPPAPR DPRHSLRKKR KRKLHSSSQK TTDIGSSSHN AVESSSQGNP QTSATPPLPP PSLAGETSGS SQPKLPPHNL NSTEPLSSEA
2101: IIIPPPEEDS VIAAAPSEAP GPSLEGITGT TKSISLESQS SEPETINQDG DLDPETDEKV ESERTPLHSD EKQEEQESEN ALNKQCEPIE AESQNTNAEE
2201: EAEAQEEDEE SMKMVTGNSL SDD
Arabidopsis Description
CHR4PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.