Factsheet for Solyc08g029120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05279	Soybean	nucleus	46.74	72.85
Solyc06g065730.2.1	Tomato	nucleus	83.85	41.2
VIT_04s0008g05880.t01	Wine grape	nucleus	82.86	39.74
KRH61691	Soybean	nucleus	81.16	39.74
KRH52357	Soybean	nucleus	80.74	39.58
CDY56279	Canola	cytosol	74.08	38.94
Bra007814.1-P	Field mustard	nucleus	74.08	38.31
CDX76767	Canola	cytosol, nucleus, plastid	74.22	38.08
AT2G25170.3	Thale cress	endoplasmic reticulum	74.93	37.52
GSMUA_Achr4P21270_001	Banana	cytosol	71.53	36.62
CDX75208	Canola	cytosol	61.76	36.45
CDX68802	Canola	cytosol	61.9	36.0
Bra011311.1-P	Field mustard	nucleus	61.61	35.83
KXG19483	Sorghum	cytosol	64.59	34.44
Zm00001d045109_P008	Maize	cytosol	63.88	33.81
TraesCS7B01G050100.3	Wheat	nucleus	64.59	33.65
TraesCS7A01G147100.2	Wheat	nucleus	64.73	33.63
AT4G31900.1	Thale cress	nucleus	55.1	32.36
TraesCS7D01G148900.4	Wheat	nucleus	63.88	32.1
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	23.8	27.41
Solyc02g062780.2.1	Tomato	cytosol	26.77	24.51
Solyc02g085390.2.1	Tomato	cytosol	26.35	22.93
Solyc02g014770.2.1	Tomato	nucleus	23.94	22.9
Solyc01g079690.2.1	Tomato	nucleus	28.05	19.9
Solyc01g067390.2.1	Tomato	nucleus	28.9	19.15
Solyc06g054560.2.1	Tomato	nucleus	28.47	18.94
Solyc12g099910.1.1	Tomato	nucleus	34.14	14.12
Solyc04g016370.2.1	Tomato	nucleus	27.62	12.67
Solyc03g063220.1.1	Tomato	nucleus	27.48	12.06
Solyc02g068560.2.1	Tomato	nucleus	36.69	10.87
Solyc01g094800.2.1	Tomato	nucleus	26.35	8.32
Solyc11g062010.1.1	Tomato	nucleus	28.05	7.42

Protein Annotations

MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.30.40.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	InterPro:Chromo-like_dom_sf
InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR013083	InterPro:IPR014001
InterPro:IPR019787	InterPro:IPR024934	InterPro:IPR038718	UniProt:K4CJX4	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF00385	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50013	PFscan:PS50016
PFscan:PS50903	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	InterPro:Rubredoxin-like_dom
SMART:SM00249	SMART:SM00298	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	SUPFAM:SSF54160	EnsemblPlantsGene:Solyc08g029120.1	EnsemblPlants:Solyc08g029120.1.1	UniParc:UPI000276BE8F	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:38142294..38163867

Molecular Weight (calculated)

81846.6 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.503

Length

706 amino acids

Sequence
(BLAST)

001: MYKLDESDDE TDMMPGKSGT KKQEIEKIVR TDVKDDSCQA CGGDSNLLYC RTCNYAYHPK CLVPPLKAPL PSSWSCPECV SPLNDIDKIL DFEMRPTVAE
101: DQDASKLGSK QVFVKQYLVK WKGLSYLHCT WVPEKEFVKV YKAYPRLKTK VNNFHRQMSS MTNSEDEYVA IRPEWTTVDR ILACRGDGEE KEYLVKWKEL
201: PYDECYWEFE SDISSFLHEI ERFHVVQSRR KKSSSKQKGR PIETTESNKK AKEFQQYESS PEFLSGGSLH PYQLEGLNFL RFAWSKQTHV ILADEMGLGK
301: TIQSIALLAS LFEEKVSPHL VIAPLSTLRN WEREFATWAP QMNVVMYVGG AQARAVIREY ELFFPKNLKK TKKKKSGQIV GESKQDRIKF DVLLTSYEMI
401: LMDSASLKPI TWECMIVDEG HRLKNKDSKL FSSLKQYSSR HRVLLTGTPL QNNLDELFML MHFLDAGKFG SLEEFQQEFA DISQEEQVSR LHKMLAPHLL
501: RRLKKDVMTE LPPKKELILR VELSSKQKEY YKAILTRNFQ ILTRKGGAQI SLINVVMELR KLCCHPFMLE GVEPEDNDEF TKELLESSGK LQLLDKMMVR
601: LKEQGHRVLI YSQFQHMLDL LEDYCNYRKW QYERIDGKVG GAERQIRIDR FNAKNSSRFC FLLSTRAGGL GINLATADTV IIYDSAVDQK SCYSFRNLGS
701: YVHFQS

Best Arabidopsis Sequence Match ( AT2G25170.2 )
(BLAST)

0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D

Arabidopsis Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.