Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G022450.1 | Barley | nucleus | 26.48 | 78.75 |
| VIT_06s0009g03750.t01 | Wine grape | nucleus | 72.41 | 70.11 |
| KRH14560 | Soybean | nucleus | 70.77 | 68.48 |
| Bra037208.1-P | Field mustard | nucleus | 67.31 | 68.15 |
| CDY37209 | Canola | nucleus | 67.19 | 68.03 |
| CDX81444 | Canola | nucleus | 67.02 | 67.57 |
| KRH73568 | Soybean | nucleus | 38.49 | 67.45 |
| AT2G13370.2 | Thale cress | nucleus | 67.25 | 66.59 |
| Os07t0660200-01 | Rice | nucleus | 24.49 | 66.24 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 60.93 | 61.9 |
| Zm00001d022405_P051 | Maize | nucleus | 59.05 | 58.47 |
| KXG36860 | Sorghum | nucleus | 58.82 | 58.14 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 58.52 | 57.81 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 58.47 | 57.75 |
| TraesCS2A01G128400.1 | Wheat | nucleus | 58.47 | 57.75 |
| Zm00001d007089_P003 | Maize | nucleus | 54.48 | 53.54 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 12.48 | 34.75 |
| Solyc08g029120.1.1 | Tomato | nucleus | 14.12 | 34.14 |
| Solyc06g054560.2.1 | Tomato | nucleus | 20.74 | 33.36 |
| Solyc02g062780.2.1 | Tomato | cytosol | 14.88 | 32.94 |
| Solyc01g067390.2.1 | Tomato | nucleus | 20.27 | 32.49 |
| Solyc02g085390.2.1 | Tomato | cytosol | 15.17 | 31.94 |
| Solyc01g079690.2.1 | Tomato | nucleus | 16.75 | 28.74 |
| Solyc02g014770.2.1 | Tomato | nucleus | 11.54 | 26.69 |
| Solyc06g065730.2.1 | Tomato | nucleus | 19.92 | 23.66 |
| Solyc04g016370.2.1 | Tomato | nucleus | 15.41 | 17.09 |
| Solyc03g063220.1.1 | Tomato | nucleus | 15.17 | 16.11 |
| Solyc02g068560.2.1 | Tomato | nucleus | 21.15 | 15.15 |
| Solyc01g094800.2.1 | Tomato | nucleus | 17.57 | 13.42 |
| Solyc11g062010.1.1 | Tomato | nucleus | 19.04 | 12.19 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:12.4.1.1.2 | MapMan:15.3.4.5 | Gene3D:2.40.50.40 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
| InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF4208 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0009506 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:K4DI12 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFAM:PF00385 | PFAM:PF13907 | PFscan:PS50013 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF952 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01176 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | EnsemblPlantsGene:Solyc12g099910.1 | EnsemblPlants:Solyc12g099910.1.1 | UniParc:UPI000276A9D6 |
| SEG:seg | : | : | : | : | : |
Description
Protein CHROMATIN REMODELING 5 [Source:Projected from Arabidopsis thaliana (AT2G13370) UniProtKB/Swiss-Prot;Acc:F4IV99]
Coordinates
chr12:+:66852638..66872797
Molecular Weight (calculated)
193476.0 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.811
Length
1707 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAFYRNYSNE TVTLDDKSQG EQSMQGIHHD VGNEEVEGSL SENDDNGQLQ DEVGVEVETT AEDQVPPGRG VNLSGKWGSG FWKDCQPMGP SGRSGSGEES
0101: KSGSEYKNEE ESDEVSDGRE DQLESEDEGR QKEMGKSRSV PADEMLSDEY YEQDGDDQSD SLHYRAANPS SGYSSKLQSR PVSASKYASR KAKASKDQED
0201: NEYADYEDDD SEDEDDPDDP DYGSTGRGKG IKDKDDDWEG GESDEVNSDD DEVGISDEDE EFYRKSQGKQ KNRGGHSVKS TRVVRSLATS ARQKRGRTSY
0301: EEEESSEHDS ENESDEDFGN KPRRVANLRL KNSGRSSAAS VSGRNSEIRT SSRRSVRKVS YAESEESEEI DESKQKKGQK EELEEEDCDS IEKVLWHQPK
0401: GMAEEAAMNN KSADPMLLSH LYDSEPDWNE MEFLIKWKGQ SHLHCQWKSF VELQNLSGFK KVLNYTKRVM EDVKYRKTVS REEIEVNDVS KEMDLDIIKL
0501: NSQVERVIAD RISKDGYGNV VPEYLVKWKG LSYAEATWEK DVDIAFGQDA IDEYKAREAA IMVQGKSVDF QRKKSRGSLR KLEEQPEWLK GGKLRDYQLE
0601: GLNFLVNSWR NDTNVILADE MGLGKTVQSV SMLGFLQNAQ QIHGPFLVVV PLSTLANWAK EFRKWLPDMN VIVYVGARAS REVCQQYEFY NDNKVGRTTK
0701: FDALLTTYEV LLKDKAVLSK IRWNYLMVDE AHRLKNSEAS LYTTLLEFDT KNKLLITGTP LQNSVEELWA LLHFLDPDKF KSKDDFVQNY KNLSSFNEME
0801: LANLHKELRP HILRRVIKDV EKSLPPKIER ILRVEMSPLQ KQYYKWILER NFQDLNKGVR GNQVSLLNIV VELKKCCNHP FLFESADHGY GGDANYFGSS
0901: KLERIILSSG KLVILDKLLD RLHETKHRVL IFSQMVRMLD ILAEYLSIKG FQYQRLDGST KSELRQQAMD HFNAPGSEDF CFLLSTRAGG LGINLATADT
1001: VIIFDSDWNP QNDLQAMSRA HRIGQQEVVN IYRFVTSKSV EEDILERAKK KMVLDHLVIQ KLNAEGKLEK KETKKGSLFD KNELSAILRF GAEELFKEEK
1101: NDEESKKRLL SMDIDEILER AEKVEEKGAE AEEGKELLSA FKVANFCGAE DDATFWSRWI KPEATAHAED ALAPRAARNK KSYAEASPLV VTNKRKKGGD
1201: AQERFPKRRK GDFSCTLPAI DGASAQVRGW SFGNLSKRDA TRFSREVKKF GNDSQIDLIS SEVGGAVEAA PTEAQVELFD SLIDGCREAV KGEVVDPKGP
1301: LLDFFGVPVK ADELLARVEE LQLLAKRISR YADPVSQFRA LAYLKPATWS KGCGWNQKDD ARLLLGIHYH GFGNWEKIRL DEKLGLMKKI APVELQHHET
1401: FLPRAPQLKE RASQLLQMEV AAVGGKNTSL KVGRKTSNKQ KESLPSTTAS LGKGKQSKLS SSGNAKMGRG RAAKGQKKVE PLIKEEGEMS DNEEVYEQFK
1501: EVKWMEWCED VMVYEEKTLK RLQRLQTTSA DLPKDKVLAK IRNYLQLLGR RIDQIVFEYE NESHKQERMT VRLWNYVSTF SNLSGEKLRQ IYSKLKQEQH
1601: VEGRVGPSQF NGSAPAHPTP GFVPRGFDAA KFEAWKRRKR AEADVHSQVQ PQHQRALTNG TRLPEPNLSS GILGAAPLDS KQSGSGRPYR THQSGLPQRP
1701: GFSSGPR
0101: KSGSEYKNEE ESDEVSDGRE DQLESEDEGR QKEMGKSRSV PADEMLSDEY YEQDGDDQSD SLHYRAANPS SGYSSKLQSR PVSASKYASR KAKASKDQED
0201: NEYADYEDDD SEDEDDPDDP DYGSTGRGKG IKDKDDDWEG GESDEVNSDD DEVGISDEDE EFYRKSQGKQ KNRGGHSVKS TRVVRSLATS ARQKRGRTSY
0301: EEEESSEHDS ENESDEDFGN KPRRVANLRL KNSGRSSAAS VSGRNSEIRT SSRRSVRKVS YAESEESEEI DESKQKKGQK EELEEEDCDS IEKVLWHQPK
0401: GMAEEAAMNN KSADPMLLSH LYDSEPDWNE MEFLIKWKGQ SHLHCQWKSF VELQNLSGFK KVLNYTKRVM EDVKYRKTVS REEIEVNDVS KEMDLDIIKL
0501: NSQVERVIAD RISKDGYGNV VPEYLVKWKG LSYAEATWEK DVDIAFGQDA IDEYKAREAA IMVQGKSVDF QRKKSRGSLR KLEEQPEWLK GGKLRDYQLE
0601: GLNFLVNSWR NDTNVILADE MGLGKTVQSV SMLGFLQNAQ QIHGPFLVVV PLSTLANWAK EFRKWLPDMN VIVYVGARAS REVCQQYEFY NDNKVGRTTK
0701: FDALLTTYEV LLKDKAVLSK IRWNYLMVDE AHRLKNSEAS LYTTLLEFDT KNKLLITGTP LQNSVEELWA LLHFLDPDKF KSKDDFVQNY KNLSSFNEME
0801: LANLHKELRP HILRRVIKDV EKSLPPKIER ILRVEMSPLQ KQYYKWILER NFQDLNKGVR GNQVSLLNIV VELKKCCNHP FLFESADHGY GGDANYFGSS
0901: KLERIILSSG KLVILDKLLD RLHETKHRVL IFSQMVRMLD ILAEYLSIKG FQYQRLDGST KSELRQQAMD HFNAPGSEDF CFLLSTRAGG LGINLATADT
1001: VIIFDSDWNP QNDLQAMSRA HRIGQQEVVN IYRFVTSKSV EEDILERAKK KMVLDHLVIQ KLNAEGKLEK KETKKGSLFD KNELSAILRF GAEELFKEEK
1101: NDEESKKRLL SMDIDEILER AEKVEEKGAE AEEGKELLSA FKVANFCGAE DDATFWSRWI KPEATAHAED ALAPRAARNK KSYAEASPLV VTNKRKKGGD
1201: AQERFPKRRK GDFSCTLPAI DGASAQVRGW SFGNLSKRDA TRFSREVKKF GNDSQIDLIS SEVGGAVEAA PTEAQVELFD SLIDGCREAV KGEVVDPKGP
1301: LLDFFGVPVK ADELLARVEE LQLLAKRISR YADPVSQFRA LAYLKPATWS KGCGWNQKDD ARLLLGIHYH GFGNWEKIRL DEKLGLMKKI APVELQHHET
1401: FLPRAPQLKE RASQLLQMEV AAVGGKNTSL KVGRKTSNKQ KESLPSTTAS LGKGKQSKLS SSGNAKMGRG RAAKGQKKVE PLIKEEGEMS DNEEVYEQFK
1501: EVKWMEWCED VMVYEEKTLK RLQRLQTTSA DLPKDKVLAK IRNYLQLLGR RIDQIVFEYE NESHKQERMT VRLWNYVSTF SNLSGEKLRQ IYSKLKQEQH
1601: VEGRVGPSQF NGSAPAHPTP GFVPRGFDAA KFEAWKRRKR AEADVHSQVQ PQHQRALTNG TRLPEPNLSS GILGAAPLDS KQSGSGRPYR THQSGLPQRP
1701: GFSSGPR
0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
Arabidopsis Description
CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.