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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_15s0046g02290.t01 Wine grape plastid 70.26 69.42
KRH06623 Soybean nucleus 65.34 66.32
KRH48113 Soybean nucleus 65.97 66.26
KRH00799 Soybean nucleus 64.8 65.21
KRH40427 Soybean nucleus 64.76 65.17
Bra000409.1-P Field mustard plastid 61.36 63.46
CDX83383 Canola nucleus, plastid 60.42 63.28
AT2G46020.3 Thale cress plastid 62.03 63.25
CDX95673 Canola cytosol 27.73 63.01
CDY27338 Canola nucleus, plastid 59.26 62.98
CDY37083 Canola plastid 59.3 62.87
Bra039296.1-P Field mustard plastid 59.97 62.75
CDY71637 Canola nucleus 19.28 58.24
CDX95672 Canola plastid 27.95 57.87
OQU84199 Sorghum nucleus 54.74 57.71
Zm00001d014977_P002 Maize nucleus 55.05 56.91
GSMUA_AchrUn_... Banana nucleus, plastid 56.48 56.66
TraesCS6A01G034200.2 Wheat nucleus, plastid 55.59 56.12
TraesCS6B01G048200.2 Wheat nucleus, plastid 55.41 56.06
HORVU6Hr1G006050.1 Barley plastid 55.5 56.05
TraesCS6D01G039800.1 Wheat nucleus, plastid 55.46 56.03
GSMUA_Achr1P24350_001 Banana nucleus 53.22 55.82
GSMUA_AchrUn_... Banana nucleus 52.37 54.57
Solyc01g079690.2.1 Tomato nucleus 14.94 33.57
Solyc01g090650.1.1 Tomato cytosol, nucleus, plastid 8.27 30.18
Solyc02g062780.2.1 Tomato cytosol 10.11 29.31
Solyc02g085390.2.1 Tomato cytosol 10.2 28.11
Solyc08g029120.1.1 Tomato nucleus 8.32 26.35
Solyc06g054560.2.1 Tomato nucleus 12.34 26.01
Solyc01g067390.2.1 Tomato nucleus 12.16 25.54
Solyc02g014770.2.1 Tomato nucleus 8.41 25.47
Solyc04g016370.2.1 Tomato nucleus 12.92 18.78
Solyc12g099910.1.1 Tomato nucleus 13.42 17.57
Solyc06g065730.2.1 Tomato nucleus 11.05 17.19
Solyc03g063220.1.1 Tomato nucleus 11.58 16.11
Solyc11g062010.1.1 Tomato nucleus 17.8 14.92
Solyc02g068560.2.1 Tomato nucleus 12.97 12.17
Protein Annotations
Gene3D:1.20.920.10MapMan:12.4.1.1.3Gene3D:3.40.50.10810Gene3D:3.40.50.300InterPro:BRMInterPro:Bromodomain
InterPro:Bromodomain-like_sfncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003682GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006139
GO:GO:0006355GO:GO:0006412GO:GO:0006950GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009628GO:GO:0009653GO:GO:0009987GO:GO:0010199GO:GO:0016043
GO:GO:0016787GO:GO:0019538GO:GO:0040029GO:GO:0043044GO:GO:1900036GO:GO:1903798
InterPro:Gln-Leu-Gln_QLQInterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001487InterPro:IPR001650InterPro:IPR014001
InterPro:IPR014978InterPro:IPR036427InterPro:IPR038718UniProt:K4AZM0InterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF08880PFscan:PS50014PFscan:PS51192PFscan:PS51194PFscan:PS51666
PANTHER:PTHR10799PANTHER:PTHR10799:SF577SMART:SM00297SMART:SM00487SMART:SM00490SMART:SM00951
InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF47370SUPFAM:SSF52540EnsemblPlantsGene:Solyc01g094800.2EnsemblPlants:Solyc01g094800.2.1
UniParc:UPI0002768B5FSEG:seg::::
Description
ATP-dependent helicase BRM [Source:Projected from Arabidopsis thaliana (AT2G46020) UniProtKB/Swiss-Prot;Acc:Q6EVK6]
Coordinates
chr1:+:86208090..86220086
Molecular Weight (calculated)
250048.0 Da
IEP (calculated)
9.472
GRAVY (calculated)
-0.774
Length
2236 amino acids
Sequence
(BLAST)
0001: MQSGGGAQQG GVAGAGGGHG RNTAASASAS PTSSSSASHM GLDQQQLHQQ HQRQSLQQQL LRRPEGNEAI LAFQTGSPHG ILGGGNFVGP SGSMQLPQQS
0101: RRYIEQHDSP TIREDGQNRS QGFEQPMLSP VQQAYLQYAF QAAQQKSALG MQHQQQMKMG MFGPSAKDQD PRLANMKIQE LVSMQAPNQA QASSSKISSE
0201: QLFSRSEKQS DQGQQLMTDQ RPDPKLPSQP TLLGQTVATK PMQAPPSQQS MANMASNSLA MAAQMQAMQA LAYERNVDLS LPANANIMQQ LIPLMQSRMI
0301: AQQKVPENNV PVQSSSGHMP KQQVSSPQVA NDSSPHAHSS SDLSGSSSAK TRQAVTTGPL TASHSVASVN NPNNIPQQQF SAHGRENNLP PRQPIMASSG
0401: LPPMHYPQSS VNPNQGADNT SLPKPASNAQ EILQTQYARQ LSRPSSHSAA SSPDGNSGNP LMSQGGNVRQ VQPQLGFSKQ QLHVLKAQIL AFRRIKKGDG
0501: TLPRELLQAI IPPPLDVQMQ QTFPPGGIVN QERTPGKGSE DNRRPSEPSE KGPQLVVPSN GPNGSKEEVT REESTAAATA TAPVPGSTTE TKENASVVLP
0601: GKEEQRIMGH TSKSDQDADH AIKNTTGRGD IAPDRGKAVA SQVTGSDTTQ VKKAMQSSAT QQKDTGPARK YHGPLFDFPF FTRKHDGFGP SMMMNNNNNL
0701: TLGYDIKDLL MEEGSEFHKR KREESIKKIG DILAINLERK RIRPDLVLRL QIEEKKLRLA GIQARMRDEI DQQQQEIMAM PDRHYRKFVR LCERQRQDLS
0801: RQVQASQKAS REKQLKLIFQ WRKKLLEAHW AIRDARTARN RGVAKYHERM LREFSKKKDD NRNERMEALK NNDVERYREM LLEQQTNVPG DGAERYAVLS
0901: SFLSQTEEYL HKLGGKITAT KKQQEVDEAA NAAAVAARAQ GLSEEEVRAA AACAREEVMI RNRFSEMNAP RDGSSVNKYY HLAHAVNERV IKQPSMLRAG
1001: TLRDYQLVGL QWMLSLYNNK LNGILADEMG LGKTVQVMAL IAYLMEFKQN YGPHLIIVPN AVLVNWKSEF LNWLPSASCI FYVGGKDQRS KLFSQEVCAM
1101: KFNVLVTTYE FIMYDRAKLS KVDWKYIIID EAQRMKDRES VLARDLDRYR CQRRLLLTGT PLQNDLKELW SLLNLLLPEV FDNRKAFHDW FSKPFQKEGP
1201: THNAEDDWLE TEKKVIVIHR LHQILEPFML RRRVEDVEGS LPPKVSVVLR CRMSGFQSAV YDWIKSTGTL RVDPEDEKRR AEKNPNYQPK TYKVLNNRCM
1301: ELRKTCNHPL LNYPYLNVTK DFLVKSCGKL WILDRILIKL QRAGHRVLLF STMTKLLDIL EEHLQWRRLV YRRIDGTTSL EDRESAIVDF NSPDTDCFIF
1401: LLSIRAAGRG LNLQTADTVI IYDPDPNPKN EEQAVARAHR IGQKREVKVI YLEAVVDKIA SHQKEDEYRG GVVDSDDDLA GKDRYMGSIE SLIRNNIQQY
1501: KIDMADEVIN AGRFDQRTTH EERRLTLETL LHDEERYQET LHDVPSLQEV NRMIARSEEE VEQFDQMDEE YDWEEEMTRY DQVPKWLRAS SKDVNMAIAN
1601: LAKKPSKNVL FSSGVGVDSS GLAPESEKKR GRPKGKKVPI YTELDDDNGE FSEASSGERN GYSAHEDGEI GEFEDDEFSG AVGVTPVNKD QSEEDGPSFA
1701: DRYEYHQGPQ GAIKTRVPDQ LGSSGSSSDN QRPTQIVSSS VSSQQKFGSL SALDARPSSR AKRMADELEE GEIAVSGDSH VDLQQSGSWI QDRDEGEDEQ
1801: VLQPKIKRKR SLRVRPRQAT ERPEEALIEK PAVQRGDSSQ MAFQGDRRYD LQMRNDRGHK THAGPSGPKN NQNDASFKSK RSIPSRKSSS NSVKVYGLGK
1901: PGKVSRLSPD DAFEPTRESW DNKLMNASGT YSGGTKMSEV IQRKCKTVVT KLQKKIEKGG HQIIPLLHGL WKRIGSSGCM GGSEDSPFGL QTIDLRVDES
2001: EYSGVLEFVS DVQLMLKRAV QYFGFSHEVR SEARKVHDLF FDILKIEFPE TDFREARNSI SFAGPAASTT PASSRLMPVG QNKRHKLINE MEPDSSPLLK
2101: PQTRGTLHAG EDAKAKSHMA QRETRFGGSS SRELSQQDDS RPFTHPGELV ICKKKRKDRE KLGLKPGSSS AGPVSPPGVS RSIRSPGSLP TVKEGGRLNQ
2201: QTPQQLNGSG SSSSVGWANP VKRLRSDSAR RRQSHL
Best Arabidopsis Sequence Match ( AT2G46020.4 )
(BLAST)
0001: MQSGGSGGGP ARNPAMGPAG RTASTSSAAS PSSSSSSVQQ QQQQQQQQQQ QQQLASRQQQ QQHRNSDTNE NMFAYQPGGV QGMMGGGNFA SSPGSMQMPQ
0101: QSRNFFESPQ QQQQQQQQGS STQEGQQNFN PMQQAYIQFA MQAQHQKAQQ QARMGMVGSS SVGKDQDARM GMLNMQDLNP SSQPQASSSK PSGDQFARGE
0201: RQTESSSQQR NETKSHPQQQ VGTGQLMPGN MIRPMQAPQA QQLVNNMGNN QLAFAQQWQA MQAWARERNI DLSHPANASQ MAHILQARMA AQQKAGEGNV
0301: ASQSPSIPIS SQPASSSVVP GENSPHANSA SDISGQSGSA KARHALSTGS FASTSSPRMV NPAMNPFSGQ GRENPMYPRH LVQPTNGMPS GNPLQTSANE
0401: TPVLDQNAST KKSLGPAEHL QMQQPRQLNT PTPNLVAPSD TGPLSNSSLQ SGQGTQQAQQ RSGFTKQQLH VLKAQILAFR RLKKGEGSLP PELLQAISPP
0501: PLELQTQRQI SPAIGKVQDR SSDKTGEDQA RSLECGKESQ AAASSNGPIF SKEEDNVGDT EVALTTGHSQ LFQNLGKEAT STDVATKEEQ QTDVFPVKSD
0601: QGADSSTQKN PRSDSTADKG KAVASDGSQS KVPPQANSPQ PPKDTASARK YYGPLFDFPF FTRKLDSYGS ATANANNNLT LAYDIKDLIC EEGAEFLSKK
0701: RTDSLKKING LLAKNLERKR IRPDLVLRLQ IEEKKLRLSD LQSRVREEVD RQQQEIMSMP DRPYRKFVRL CERQRLEMNR QVLANQKAVR EKQLKTIFQW
0801: RKKLLEAHWA IRDARTARNR GVAKYHEKML REFSKRKDDG RNKRMEALKN NDVERYREML LEQQTNMPGD AAERYAVLSS FLTQTEDYLH KLGGKITATK
0901: NQQEVEEAAN AAAVAARLQG LSEEEVRAAA TCAREEVVIR NRFTEMNAPK ENSSVNKYYT LAHAVNEVVV RQPSMLQAGT LRDYQLVGLQ WMLSLYNNKL
1001: NGILADEMGL GKTVQVMALI AYLMEFKGNY GPHLIIVPNA VLVNWKSELH TWLPSVSCIY YVGTKDQRSK LFSQEVCAMK FNVLVTTYEF IMYDRSKLSK
1101: VDWKYIIIDE AQRMKDRESV LARDLDRYRC QRRLLLTGTP LQNDLKELWS LLNLLLPDVF DNRKAFHDWF AQPFQKEGPA HNIEDDWLET EKKVIVIHRL
1201: HQILEPFMLR RRVEDVEGSL PAKVSVVLRC RMSAIQSAVY DWIKATGTLR VDPDDEKLRA QKNPIYQAKI YRTLNNRCME LRKACNHPLL NYPYFNDFSK
1301: DFLVRSCGKL WILDRILIKL QRTGHRVLLF STMTKLLDIL EEYLQWRRLV YRRIDGTTSL EDRESAIVDF NDPDTDCFIF LLSIRAAGRG LNLQTADTVV
1401: IYDPDPNPKN EEQAVARAHR IGQTREVKVI YMEAVVEKLS SHQKEDELRS GGSVDLEDDM AGKDRYIGSI EGLIRNNIQQ YKIDMADEVI NAGRFDQRTT
1501: HEERRMTLET LLHDEERYQE TVHDVPSLHE VNRMIARSEE EVELFDQMDE EFDWTEEMTN HEQVPKWLRA STREVNATVA DLSKKPSKNM LSSSNLIVQP
1601: GGPGGERKRG RPKSKKINYK EIEDDIAGYS EESSEERNID SGNEEEGDIR QFDDDELTGA LGDHQTNKGE FDGENPVCGY DYPPGSGSYK KNPPRDDAGS
1701: SGSSPESHRS KEMASPVSSQ KFGSLSALDT RPGSVSKRLL DDLEEGEIAA SGDSHIDLQR SGSWAHDRDE GDEEQVLQPT IKRKRSIRLR PRQTAERVDG
1801: SEMPAAQPLQ VDRSYRSKLR TVVDSHSSRQ DQSDSSSRLR SVPAKKVAST SKLHVSSPKS GRLNATQLTV EDNAEASRET WDGTSPISSS NAGARMSHII
1901: QKRCKIVISK LQRRIDKEGQ QIVPMLTNLW KRIQNGYAAG GVNNLLELRE IDHRVERLEY AGVMELASDV QLMLRGAMQF YGFSHEVRSE AKKVHNLFFD
2001: LLKMSFPDTD FREARNALSF SGSAPTLVST PTPRGAGISQ GKRQKLVNEP ETEPSSPQRS QQRENSRIRV QIPQKETKLG GTTSHTDESP ILAHPGELVI
2101: CKKKRKDREK SGPKTRTGGS SSPVSPPPAM IGRGLRSPVS GGVPRETRLA QQQRWPNQPT HPNNSGAAGD SVGWANPVKR LRTDSGKRRP SHL
Arabidopsis Description
BRMATP-dependent helicase BRM [Source:UniProtKB/Swiss-Prot;Acc:Q6EVK6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.