Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35559 | Soybean | nucleus | 75.88 | 70.43 |
| KRG91253 | Soybean | nucleus | 75.88 | 70.36 |
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 77.39 | 69.81 |
| KRH27613 | Soybean | nucleus | 73.77 | 69.05 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 59.9 | 65.93 |
| CDY18840 | Canola | nucleus | 70.75 | 65.0 |
| Bra040237.1-P | Field mustard | nucleus | 70.85 | 64.09 |
| AT3G06010.1 | Thale cress | nucleus | 70.15 | 63.34 |
| AT5G19310.1 | Thale cress | nucleus | 65.93 | 61.65 |
| Zm00001d024816_P007 | Maize | cytosol | 65.13 | 58.38 |
| Os05t0144300-01 | Rice | nucleus | 65.83 | 58.07 |
| Zm00001d006798_P002 | Maize | nucleus | 64.52 | 57.53 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.03 | 57.41 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 64.92 | 56.92 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 65.03 | 56.9 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 72.26 | 49.05 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 66.83 | 48.19 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 20.8 | 33.77 |
| Solyc02g062780.2.1 | Tomato | cytosol | 24.32 | 31.39 |
| Solyc02g085390.2.1 | Tomato | cytosol | 25.33 | 31.07 |
| Solyc08g029120.1.1 | Tomato | nucleus | 19.9 | 28.05 |
| Solyc01g067390.2.1 | Tomato | nucleus | 29.65 | 27.7 |
| Solyc06g054560.2.1 | Tomato | nucleus | 29.25 | 27.43 |
| Solyc02g014770.2.1 | Tomato | nucleus | 20.2 | 27.24 |
| Solyc06g065730.2.1 | Tomato | nucleus | 25.33 | 17.54 |
| Solyc04g016370.2.1 | Tomato | nucleus | 25.93 | 16.76 |
| Solyc12g099910.1.1 | Tomato | nucleus | 28.74 | 16.75 |
| Solyc03g063220.1.1 | Tomato | nucleus | 26.23 | 16.23 |
| Solyc01g094800.2.1 | Tomato | nucleus | 33.57 | 14.94 |
| Solyc11g062010.1.1 | Tomato | nucleus | 34.47 | 12.86 |
| Solyc02g068560.2.1 | Tomato | nucleus | 26.83 | 11.2 |
Protein Annotations
| MapMan:12.4.1.1.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0042393 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:K4AXL4 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFAM:PF14619 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01314 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SignalP:SignalP-noTM |
| InterPro:SnAC | EnsemblPlantsGene:Solyc01g079690.2 | EnsemblPlants:Solyc01g079690.2.1 | UniParc:UPI0002761F31 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:78798549..78805633
Molecular Weight (calculated)
114693.0 Da
IEP (calculated)
7.683
GRAVY (calculated)
-0.590
Length
995 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLCWLILS FMYPPPLVIF APNLNNRIIL LTCRDLPTSR GEDLQSKCLL ELYELKLADL QQKVRSEVSS EYWLRLHCAN PDKQLFDWGM TRLRRPVYGI
101: GDAFAVESDD PLRKKRDAQR LSRIEEEERN RVETTKRKFF ADVLNAAREL QLQVQAVQKR RKQRNDGVQA WHGRQRQRAT RAEKLRLQAL KADDQEAYMK
201: MVEESKNERL TMLLGKTNDL LGRLGAAVQR QKDADHDGLE SLEGSDAEMA ATKTDTPGQS LPEEEEDVID DESTHDVKTN DLLEGQRKYN SAVHSIQEKV
301: TEQPAMLQGG ELRSYQIEGL QWMLSLFNNN LNGILADEMG LGKTIQTIAL IAYLLENKGV RGPHLIVAPK AVLPNWITEF STWAPSIVAI LYDGRLEERK
401: ALREELTGEG RFSVLITHYD LIMRDKAFLK KIHWHYLIID EGHRLKNHEC ALARTLVSGY RIRRRLLLTG TPIQNSLQEL WSLLNFLLPN IFNSVENFEE
501: WFNAPFADKC DVSLTDEEEL LIIRRLHHVI RPFILRRKKD EVEKFLPGKT QVVLKCDMSA WQKVYYQQVT DVGRVGLDSG TGRSKSLQNL SMQLRKCCNH
601: PYLFVAEYNI YRKEEIVRAS GKFELLDRLL PKLRRAGHRV LLFSQMTRLM DILEVYLQVH DFKYLRLDGS TKTEERGTLL KQFNAPDSPY FMFLLSTRAG
701: GLGLNLQTAD TVIIFDSDWN PQMDQQAEDR AHRIGQKKEV RVFVLVSVGS IEEVILERAK QKMGIDAKVI QAGLFNTTST AQERRDMLEE IMRKGTSTLG
801: TDVPSEREIN RLAARSDEEF WLFEKMDEER RQKERYRSRL MEDHEVPDWA YATPDSKEKG KGFLYESANI TGKRRRKEVV YADTLSDVQW MKAVENGDDF
901: FTQSSKGRNR DHQSVSNGEL PSGNADSERT GHDLKPDTVS VASEATSEDT YGRTPKRFKS ESASSMRNDY HDLTGHSVDG LSWKAHRRRR SSLIS
101: GDAFAVESDD PLRKKRDAQR LSRIEEEERN RVETTKRKFF ADVLNAAREL QLQVQAVQKR RKQRNDGVQA WHGRQRQRAT RAEKLRLQAL KADDQEAYMK
201: MVEESKNERL TMLLGKTNDL LGRLGAAVQR QKDADHDGLE SLEGSDAEMA ATKTDTPGQS LPEEEEDVID DESTHDVKTN DLLEGQRKYN SAVHSIQEKV
301: TEQPAMLQGG ELRSYQIEGL QWMLSLFNNN LNGILADEMG LGKTIQTIAL IAYLLENKGV RGPHLIVAPK AVLPNWITEF STWAPSIVAI LYDGRLEERK
401: ALREELTGEG RFSVLITHYD LIMRDKAFLK KIHWHYLIID EGHRLKNHEC ALARTLVSGY RIRRRLLLTG TPIQNSLQEL WSLLNFLLPN IFNSVENFEE
501: WFNAPFADKC DVSLTDEEEL LIIRRLHHVI RPFILRRKKD EVEKFLPGKT QVVLKCDMSA WQKVYYQQVT DVGRVGLDSG TGRSKSLQNL SMQLRKCCNH
601: PYLFVAEYNI YRKEEIVRAS GKFELLDRLL PKLRRAGHRV LLFSQMTRLM DILEVYLQVH DFKYLRLDGS TKTEERGTLL KQFNAPDSPY FMFLLSTRAG
701: GLGLNLQTAD TVIIFDSDWN PQMDQQAEDR AHRIGQKKEV RVFVLVSVGS IEEVILERAK QKMGIDAKVI QAGLFNTTST AQERRDMLEE IMRKGTSTLG
801: TDVPSEREIN RLAARSDEEF WLFEKMDEER RQKERYRSRL MEDHEVPDWA YATPDSKEKG KGFLYESANI TGKRRRKEVV YADTLSDVQW MKAVENGDDF
901: FTQSSKGRNR DHQSVSNGEL PSGNADSERT GHDLKPDTVS VASEATSEDT YGRTPKRFKS ESASSMRNDY HDLTGHSVDG LSWKAHRRRR SSLIS
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.