Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g033480.2.1 | |
| Solyc05g018600.2.1 | |
| Solyc06g084090.2.1 | |
| Solyc12g006830.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g06370.t01 | Wine grape | nucleus | 69.65 | 54.58 |
| KRH71872 | Soybean | nucleus | 66.92 | 52.72 |
| KRH38118 | Soybean | nucleus | 66.67 | 52.32 |
| CDY08401 | Canola | nucleus | 63.43 | 50.87 |
| CDY52874 | Canola | nucleus | 63.37 | 50.52 |
| Bra034727.1-P | Field mustard | nucleus | 63.43 | 50.52 |
| AT3G12810.1 | Thale cress | nucleus | 64.55 | 50.51 |
| OQU85588 | Sorghum | nucleus | 60.63 | 48.1 |
| Zm00001d051507_P007 | Maize | nucleus | 60.26 | 47.02 |
| Zm00001d017660_P021 | Maize | nucleus | 59.83 | 46.65 |
| TraesCS7A01G544700.1 | Wheat | nucleus | 59.33 | 44.25 |
| TraesCS7D01G531100.1 | Wheat | nucleus | 59.7 | 44.22 |
| TraesCS7B01G468100.1 | Wheat | nucleus | 59.58 | 44.13 |
| GSMUA_Achr3P26510_001 | Banana | nucleus | 42.35 | 41.86 |
| Os02t0689800-01 | Rice | nucleus | 23.94 | 36.12 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 11.82 | 31.0 |
| Solyc02g014770.2.1 | Tomato | nucleus | 13.87 | 30.22 |
| Solyc02g085390.2.1 | Tomato | cytosol | 15.11 | 29.96 |
| Solyc02g062780.2.1 | Tomato | cytosol | 14.3 | 29.83 |
| Solyc08g029120.1.1 | Tomato | nucleus | 12.06 | 27.48 |
| Solyc01g079690.2.1 | Tomato | nucleus | 16.23 | 26.23 |
| Solyc01g067390.2.1 | Tomato | nucleus | 16.36 | 24.69 |
| Solyc06g054560.2.1 | Tomato | nucleus | 16.23 | 24.6 |
| Solyc04g016370.2.1 | Tomato | nucleus | 19.22 | 20.08 |
| Solyc06g065730.2.1 | Tomato | nucleus | 14.99 | 16.77 |
| Solyc12g099910.1.1 | Tomato | nucleus | 16.11 | 15.17 |
| Solyc01g094800.2.1 | Tomato | nucleus | 16.11 | 11.58 |
| Solyc02g068560.2.1 | Tomato | nucleus | 16.48 | 11.12 |
| Solyc11g062010.1.1 | Tomato | nucleus | 16.48 | 9.94 |
Protein Annotations
| MapMan:12.4.4.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0030312 | GO:GO:0042742 | GO:GO:0046686 |
| InterPro:HSA_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014012 |
| InterPro:IPR038718 | UniProt:K4BH70 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF07529 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51204 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF935 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00573 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc03g063220.1 |
| EnsemblPlants:Solyc03g063220.1.1 | UniParc:UPI000276763F | SEG:seg | : | : | : |
Description
Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Source:Projected from Arabidopsis thaliana (AT3G12810) UniProtKB/Swiss-Prot;Acc:Q7X9V2]
Coordinates
chr3:-:33669199..33687113
Molecular Weight (calculated)
184366.0 Da
IEP (calculated)
4.892
GRAVY (calculated)
-0.511
Length
1608 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASKVYKCKP DHETRVRRQK GLEAPKEPQR PKTHWDHVLE EMVWLSKDFE SERKWKLTLA KKVAIRASKG MLDQATRGEK RVKEEEQRLR KVALNISKDI
0101: KKFWLKIEKL VLYKHQLEVD EKKKKTLDKQ LEFLLGQTER YSTMLAENLV SSQSTCKRTN SLPAPEAFRI QCKDGSEGDV TNRDCVGENL QPLSTGSDID
0201: DDFGVQSEDE MEDDEHTIEE DEAVITKEER EEELAALQNE VDLPLEELLK RYAIGEASRD CSPEKSAADV IVSSGKGRDK CRDVDVATET DKDSSPAISG
0301: RRSVESNGVL SVPNNYCSDL GKEKLRSSRK KYQEFGQINL LDDFNDEQDD DDYVVAVGED KGYNMDDETT LLEEEELANA EANDAADEIA LLQKESELPL
0401: DELLARYKED FDTDEYVDDD SESYASASDE LLDSPAHNES EPVRVNDVPC DVLPTTVAED GENEVESVDK TGEEKQSEDI IADAAAAARS AQPTGSTFST
0501: TKVRTKFPFL LKFPLREYQH IGLDWLVTMY EKKLNGILAD EMGLGKTIMT IALLAHLACE KGIWGPHLIV VPTSVMLNWE TEFLRWCPAF KILTYFGSAK
0601: ERKIKRQGWL KPNSFHVCIT TYRLVIQDSK VFKRKKWKYL ILDEAHLIKN WKSQRWQTLL NFNSKRRILL TGTPLQNDLM ELWSLMHFLM PHIFQSHQEF
0701: KDWFCNPISG MVEGQEKVNK EVVDRLHNVL RPFILRRLKR DVEKQLPSKH EHVIYCKLSR RQRNLYEDFI ASSETQATLA SSNFFGMISV IMQLRKVCNH
0801: PDLFEGRPIV SSFDMSGIDM HLSSSICSML SPGIFSTINL GALGLLFTHL DFSMTSWESN DVQSMATPSS LIEGRVSLIH DEETSLGLKR NKKFHGTNIF
0901: EEIQKALAEE RLREAKERAA AIARWNSIKC KQKPVYSTSL REIVTVKNPV HGIYCQKSNP MSFLYSARLA ESILTPVERF QQMVDQVETF MFAIPAARSP
1001: APACWCSKPG TAIFFSPTFK ETCSEVLSPL LTPFRPAIVR RQVYFPDRRL IQFDCGKLQE LAGLLRRLKS EGHRALIFTQ MTKMLDVLEA FINLYGYTYM
1101: RLDGSTPPEE RQTLMQRFNT NPKIFLFILS TRSGGVGINL VGADTVIFYD SDWNPAMDQQ AQDRCHRIGQ TREVHIYRLI SESTIEENIL KKANQKRALD
1201: DLVIQSGSYN TEFFKKLDPM ELFSGHRTVS LKNIEVVKNS NVTEVQLSNA DVEAALQNVE DEADYMALKK VEEEEAVDNQ EFTEEAIVRL EDDELGNDDE
1301: TKADEHADHE VPVTTLSKEL VATSNVSNPL KEQAITFASK EDDIDMLADV KQMAAAAAAA GQAILSFESQ LRPIDRYAVR FLELWDPIID KTAIESQGHF
1401: EETEWELDRI EKLKEDMEAE IDDDEEPLVY ESWDTDYATE AYRQQVETLA KHQLKEELEA EAKEKELAEY ENSMGLPTYY MALLPMPTEV IERIDKIRRD
1501: FLWKGNREKH KFLLIKWEKV TQPKYQGSLG VKNLAVHNKS MMVNWLWRYN LEDEGLWNEV IMAKHGRLNQ WWTNITHFLT EWDGGRVLGC CVTHLIGTLT
1601: LNWVFVYS
0101: KKFWLKIEKL VLYKHQLEVD EKKKKTLDKQ LEFLLGQTER YSTMLAENLV SSQSTCKRTN SLPAPEAFRI QCKDGSEGDV TNRDCVGENL QPLSTGSDID
0201: DDFGVQSEDE MEDDEHTIEE DEAVITKEER EEELAALQNE VDLPLEELLK RYAIGEASRD CSPEKSAADV IVSSGKGRDK CRDVDVATET DKDSSPAISG
0301: RRSVESNGVL SVPNNYCSDL GKEKLRSSRK KYQEFGQINL LDDFNDEQDD DDYVVAVGED KGYNMDDETT LLEEEELANA EANDAADEIA LLQKESELPL
0401: DELLARYKED FDTDEYVDDD SESYASASDE LLDSPAHNES EPVRVNDVPC DVLPTTVAED GENEVESVDK TGEEKQSEDI IADAAAAARS AQPTGSTFST
0501: TKVRTKFPFL LKFPLREYQH IGLDWLVTMY EKKLNGILAD EMGLGKTIMT IALLAHLACE KGIWGPHLIV VPTSVMLNWE TEFLRWCPAF KILTYFGSAK
0601: ERKIKRQGWL KPNSFHVCIT TYRLVIQDSK VFKRKKWKYL ILDEAHLIKN WKSQRWQTLL NFNSKRRILL TGTPLQNDLM ELWSLMHFLM PHIFQSHQEF
0701: KDWFCNPISG MVEGQEKVNK EVVDRLHNVL RPFILRRLKR DVEKQLPSKH EHVIYCKLSR RQRNLYEDFI ASSETQATLA SSNFFGMISV IMQLRKVCNH
0801: PDLFEGRPIV SSFDMSGIDM HLSSSICSML SPGIFSTINL GALGLLFTHL DFSMTSWESN DVQSMATPSS LIEGRVSLIH DEETSLGLKR NKKFHGTNIF
0901: EEIQKALAEE RLREAKERAA AIARWNSIKC KQKPVYSTSL REIVTVKNPV HGIYCQKSNP MSFLYSARLA ESILTPVERF QQMVDQVETF MFAIPAARSP
1001: APACWCSKPG TAIFFSPTFK ETCSEVLSPL LTPFRPAIVR RQVYFPDRRL IQFDCGKLQE LAGLLRRLKS EGHRALIFTQ MTKMLDVLEA FINLYGYTYM
1101: RLDGSTPPEE RQTLMQRFNT NPKIFLFILS TRSGGVGINL VGADTVIFYD SDWNPAMDQQ AQDRCHRIGQ TREVHIYRLI SESTIEENIL KKANQKRALD
1201: DLVIQSGSYN TEFFKKLDPM ELFSGHRTVS LKNIEVVKNS NVTEVQLSNA DVEAALQNVE DEADYMALKK VEEEEAVDNQ EFTEEAIVRL EDDELGNDDE
1301: TKADEHADHE VPVTTLSKEL VATSNVSNPL KEQAITFASK EDDIDMLADV KQMAAAAAAA GQAILSFESQ LRPIDRYAVR FLELWDPIID KTAIESQGHF
1401: EETEWELDRI EKLKEDMEAE IDDDEEPLVY ESWDTDYATE AYRQQVETLA KHQLKEELEA EAKEKELAEY ENSMGLPTYY MALLPMPTEV IERIDKIRRD
1501: FLWKGNREKH KFLLIKWEKV TQPKYQGSLG VKNLAVHNKS MMVNWLWRYN LEDEGLWNEV IMAKHGRLNQ WWTNITHFLT EWDGGRVLGC CVTHLIGTLT
1601: LNWVFVYS
0001: MASKGGKSKP DIVMASKSGK SKPDNESRAK RQKTLEAPKE PRRPKTHWDH VLEEMAWLSK DFESERKWKL AQAKKVALRA SKGMLDQASR EERKLKEEEQ
0101: RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
0201: GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
0301: ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
0401: EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
0501: KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
0601: ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
0701: MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
0801: TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
0901: DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1001: KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1101: TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1201: ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1301: FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1401: LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1501: HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1601: KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1701: YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1801: LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1901: DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2001: FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD ISEIE
0101: RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
0201: GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
0301: ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
0401: EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
0501: KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
0601: ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
0701: MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
0801: TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
0901: DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1001: KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1101: TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1201: ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1301: FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1401: LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1501: HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1601: KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1701: YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1801: LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1901: DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2001: FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD ISEIE
Arabidopsis Description
PIE1Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.