Factsheet for Solyc03g033480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g033480.2.1
Solyc03g063220.1.1
Solyc04g009830.2.1
Solyc05g018600.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G37055.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G37055.1	Solyc04g009830.2.1	AT2G36740.1	17470967
AT5G37055.1	Solyc03g063220.1.1	AT3G12810.1	17142478
AT5G37055.1	Solyc03g063220.1.1	AT3G12810.1	17470967
AT5G37055.1	Solyc05g018600.2.1	AT3G33520.1	17142478
AT5G37055.1	Solyc05g018600.2.1	AT3G33520.1	17470967
AT5G37055.1	Solyc03g033480.2.1	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058037	Potato	nucleus	99.42	99.42
KRG98203	Soybean	nucleus	74.85	73.99
KRH30163	Soybean	nucleus	73.68	72.83
Bra002649.1-P	Field mustard	mitochondrion	69.01	69.01
CDY32983	Canola	mitochondrion	69.01	69.01
AT5G37055.1	Thale cress	mitochondrion	69.01	69.01
CDY70943	Canola	nucleus	69.01	69.01
VIT_08s0007g08060.t01	Wine grape	mitochondrion	69.01	68.6
CDY57389	Canola	mitochondrion	68.42	68.42
Bra006766.1-P	Field mustard	nucleus	67.25	67.25
EES16500	Sorghum	cytosol, nucleus, plastid	66.67	65.9
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	66.08	65.32
EES16499	Sorghum	mitochondrion	65.5	65.12
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	65.5	64.74
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	65.5	64.74
CDX99412	Canola	mitochondrion	23.98	63.08
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	64.33	62.86
CDY40293	Canola	mitochondrion	23.39	61.54
Bra031327.1-P	Field mustard	mitochondrion	23.39	61.54
CDX99372	Canola	mitochondrion	22.81	60.0
CDX77159	Canola	mitochondrion	22.81	60.0
HORVU5Hr1G047490.2	Barley	plastid	64.91	59.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	69.01	59.0
CDY60020	Canola	cytosol	44.44	58.02
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	63.74	57.67
Bra032836.1-P	Field mustard	mitochondrion	40.94	53.85
KXG22781	Sorghum	plastid	29.24	52.63

Protein Annotations

MapMan:12.4.4.3	GO:GO:0000003	GO:GO:0000812	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0031063	GO:GO:0031491	GO:GO:0040007	GO:GO:0042742	GO:GO:0042802	GO:GO:0042826
GO:GO:0043486	GO:GO:0046872	GO:GO:0048638	InterPro:IPR007529	UniProt:K4BFM0	PFAM:PF04438
PFscan:PS51083	PANTHER:PTHR13093	SUPFAM:SSF144232	EnsemblPlantsGene:Solyc03g033480.2	EnsemblPlants:Solyc03g033480.2.1	UniParc:UPI00027679D0
InterPro:Znf_HIT	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:5029337..5032066

Molecular Weight (calculated)

19181.0 Da

IEP (calculated)

8.693

GRAVY (calculated)

-0.533

Length

171 amino acids

Sequence
(BLAST)

001: MDEEISNSAR RMSMRTRKIA PKMAAALASS DNRTQAMLAR LDALESDNAV VEPQLLDDDD EASLDDEDQV FHKKYPKGTK RKTRQAKALE NKRAPKSFLE
101: LLNEANLESL PPHVPTYLRA AVGPPSSIAR RHFCTVCGFS STYTCVQCGM RFCSIKCRTI HNDTRCLKFV A

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.