CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98203
KRH30163
KRH38118
KRH52586
KRH58568
KRH61849
KRH61926
KRH71872

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	KRH52586	AT1G22920.1	21798944
AT5G37055.1	KRH61926	AT1G22920.1	21798944
AT5G37055.1	KRH58568	AT2G36740.1	17470967
AT5G37055.1	KRH38118	AT3G12810.1	17142478
AT5G37055.1	KRH71872	AT3G12810.1	17142478
AT5G37055.1	KRH38118	AT3G12810.1	17470967
AT5G37055.1	KRH71872	AT3G12810.1	17470967
AT5G37055.1	KRH61849	AT3G33520.1	17142478
AT5G37055.1	KRH61849	AT3G33520.1	17470967
AT5G37055.1	KRG98203	AT5G37055.1	17470967
AT5G37055.1	KRH30163	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30163	Soybean	nucleus	96.53	96.53
VIT_08s0007g08060.t01	Wine grape	mitochondrion	82.08	82.56
CDY70943	Canola	nucleus	74.57	75.44
Bra002649.1-P	Field mustard	mitochondrion	73.99	74.85
Bra006766.1-P	Field mustard	nucleus	73.99	74.85
PGSC0003DMT400058037	Potato	nucleus	73.99	74.85
Solyc03g033480.2.1	Tomato	nucleus	73.99	74.85
CDY32983	Canola	mitochondrion	73.99	74.85
CDY57389	Canola	mitochondrion	73.41	74.27
AT5G37055.1	Thale cress	mitochondrion	72.83	73.68
CDX99412	Canola	mitochondrion	26.59	70.77
Bra031327.1-P	Field mustard	mitochondrion	26.59	70.77
CDY40293	Canola	mitochondrion	26.01	69.23
CDX77159	Canola	mitochondrion	25.43	67.69
EES16500	Sorghum	cytosol, nucleus, plastid	67.05	67.05
CDX99372	Canola	mitochondrion	24.86	66.15
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	65.9	65.9
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	65.32	65.32
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	65.32	64.57
EES16499	Sorghum	mitochondrion	64.16	64.53
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	73.99	64.0
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	63.58	63.58
CDY60020	Canola	cytosol	46.82	61.83
HORVU5Hr1G047490.2	Barley	plastid	66.47	61.83
Bra032836.1-P	Field mustard	mitochondrion	43.93	58.46
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	63.58	58.2
KXG22781	Sorghum	plastid	30.06	54.74

Protein Annotations

EntrezGene:100804465	MapMan:12.4.4.3	EMBL:ACUP02010851	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G057300	GO:GO:0000812
GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0031063	GO:GO:0031491	GO:GO:0042826	GO:GO:0043486
GO:GO:0046872	UniProt:I1MZV0	InterPro:IPR007529	EnsemblPlants:KRG98203	ProteinID:KRG98203	ProteinID:KRG98203.1
PFAM:PF04438	PFscan:PS51083	PANTHER:PTHR13093	SUPFAM:SSF144232	UniParc:UPI000233EAFF	InterPro:Znf_HIT
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:5049118..5050850

Molecular Weight (calculated)

19347.7 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.738

Length

173 amino acids

Sequence
(BLAST)

001: MEDDGSNSIR RMSSRTRKVA SKMAAALASA DNRTQAALAR LDALENDNAG FEIADANNDD DDASLDEEDQ FYMQKKQSKG TKRKTRQAKA LEARRAPRTF
101: LELLHEANLE SLPPHVPSYW KAAVGPPSST SRRHFCTVCG FSANYTCVRC GMRFCSHRCQ NVHNDTRCLK FVA

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.