Factsheet for HORVU5Hr1G047490.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G005770.1
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G047490.2
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1
HORVU7Hr1G078440.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	HORVU0Hr1G018470.1	AT1G22920.1	21798944
AT5G37055.1	HORVU0Hr1G025410.1	AT1G22920.1	21798944
AT5G37055.1	HORVU1Hr1G008160.1	AT1G22920.1	21798944
AT5G37055.1	HORVU2Hr1G056160.5	AT1G22920.1	21798944
AT5G37055.1	HORVU2Hr1G067660.1	AT1G22920.1	21798944
AT5G37055.1	HORVU2Hr1G112000.1	AT1G22920.1	21798944
AT5G37055.1	HORVU3Hr1G021300.1	AT1G22920.1	21798944
AT5G37055.1	HORVU3Hr1G054660.1	AT1G22920.1	21798944
AT5G37055.1	HORVU3Hr1G113750.1	AT1G22920.1	21798944
AT5G37055.1	HORVU4Hr1G047410.2	AT1G22920.1	21798944
AT5G37055.1	HORVU4Hr1G048730.1	AT1G22920.1	21798944
AT5G37055.1	HORVU6Hr1G023630.1	AT1G22920.1	21798944
AT5G37055.1	HORVU7Hr1G078010.1	AT1G22920.1	21798944
AT5G37055.1	HORVU7Hr1G078440.9	AT2G36740.1	17470967
AT5G37055.1	HORVU0Hr1G005770.1	AT3G33520.1	17142478
AT5G37055.1	HORVU0Hr1G005770.1	AT3G33520.1	17470967
AT5G37055.1	HORVU5Hr1G047490.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	91.94	98.84
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	91.4	98.27
EES16500	Sorghum	cytosol, nucleus, plastid	87.1	93.64
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	83.33	89.6
EES16499	Sorghum	mitochondrion	82.26	88.95
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	83.33	88.57
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	88.17	86.77
KXG22781	Sorghum	plastid	34.41	67.37
KRG98203	Soybean	nucleus	61.83	66.47
KRH30163	Soybean	nucleus	60.75	65.32
VIT_08s0007g08060.t01	Wine grape	mitochondrion	60.22	65.12
Solyc03g033480.2.1	Tomato	nucleus	59.68	64.91
PGSC0003DMT400058037	Potato	nucleus	59.68	64.91
CDY70943	Canola	nucleus	59.68	64.91
Bra002649.1-P	Field mustard	mitochondrion	59.14	64.33
CDY32983	Canola	mitochondrion	59.14	64.33
AT5G37055.1	Thale cress	mitochondrion	58.6	63.74
CDY57389	Canola	mitochondrion	58.6	63.74
Bra006766.1-P	Field mustard	nucleus	58.6	63.74
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	66.67	62.0
CDX99412	Canola	mitochondrion	20.43	58.46
CDY40293	Canola	mitochondrion	19.89	56.92
Bra031327.1-P	Field mustard	mitochondrion	19.89	56.92
CDY60020	Canola	cytosol	39.25	55.73
CDX99372	Canola	mitochondrion	19.35	55.38
CDX77159	Canola	mitochondrion	19.35	55.38
Bra032836.1-P	Field mustard	mitochondrion	34.41	49.23

Protein Annotations

MapMan:12.4.4.3	UniProt:A0A287R324	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0040007	GO:GO:0042742	GO:GO:0042802	GO:GO:0046872	GO:GO:0048638
EnsemblPlantsGene:HORVU5Hr1G047490	EnsemblPlants:HORVU5Hr1G047490.2	InterPro:IPR007529	PFAM:PF04438	PFscan:PS51083	PANTHER:PTHR13093
SUPFAM:SSF144232	UniParc:UPI000B46AC91	InterPro:Znf_HIT	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:369158308..369161235

Molecular Weight (calculated)

20676.5 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.752

Length

186 amino acids

Sequence
(BLAST)

001: RPPSVVAARR VPKMDGEEEN PGPFRRTSSR TRRMASRMAS ALSSSDNRAQ AALARLDALE SDNAGAEVVD LNDDEYGSTD EEDHVLMQKK QSKNMKRKTR
101: QGKALEKRAV RSFMDVLQEA NLEALPPHVP TYLRAAVGPP STSSRRHYCS VCGNSANYTC PRCGTRFCSC RCQVIHNDTR CLKFVA

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.