Factsheet for Zm00001d052325_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d017660_P021
Zm00001d024059_P002
Zm00001d035012_P002
Zm00001d051507_P007
Zm00001d052325_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT5G37055.1	Zm00001d035012_P002	AT2G36740.1	17470967
AT5G37055.1	Zm00001d017660_P021	AT3G12810.1	17142478
AT5G37055.1	Zm00001d051507_P007	AT3G12810.1	17142478
AT5G37055.1	Zm00001d017660_P021	AT3G12810.1	17470967
AT5G37055.1	Zm00001d051507_P007	AT3G12810.1	17470967
AT5G37055.1	Zm00001d024059_P002	AT3G33520.1	17142478
AT5G37055.1	Zm00001d024059_P002	AT3G33520.1	17470967
AT5G37055.1	Zm00001d052325_P001	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16500	Sorghum	cytosol, nucleus, plastid	95.95	95.95
EES16499	Sorghum	mitochondrion	90.75	91.28
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	91.33	90.29
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	89.6	89.6
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	89.02	89.02
HORVU5Hr1G047490.2	Barley	plastid	89.6	83.33
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	86.13	78.84
KXG22781	Sorghum	plastid	37.57	68.42
Solyc03g033480.2.1	Tomato	nucleus	64.74	65.5
PGSC0003DMT400058037	Potato	nucleus	64.74	65.5
Bra002649.1-P	Field mustard	mitochondrion	63.58	64.33
CDY32983	Canola	mitochondrion	63.58	64.33
VIT_08s0007g08060.t01	Wine grape	mitochondrion	63.58	63.95
CDY70943	Canola	nucleus	63.01	63.74
CDY57389	Canola	mitochondrion	63.01	63.74
AT5G37055.1	Thale cress	mitochondrion	63.01	63.74
KRG98203	Soybean	nucleus	63.58	63.58
Bra006766.1-P	Field mustard	nucleus	61.85	62.57
KRH30163	Soybean	nucleus	62.43	62.43
CDX99412	Canola	mitochondrion	23.12	61.54
CDY40293	Canola	mitochondrion	22.54	60.0
Bra031327.1-P	Field mustard	mitochondrion	22.54	60.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	68.79	59.5
CDX99372	Canola	mitochondrion	21.97	58.46
CDX77159	Canola	mitochondrion	21.97	58.46
CDY60020	Canola	cytosol	41.04	54.2
Bra032836.1-P	Field mustard	mitochondrion	37.57	50.0

Protein Annotations

EntrezGene:100194045	MapMan:12.4.4.3	ProteinID:AQK56948.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0040007	GO:GO:0042742	GO:GO:0042802	GO:GO:0046872
GO:GO:0048638	InterPro:IPR007529	UniProt:K7V1K5	PFAM:PF04438	PFscan:PS51083	PANTHER:PTHR13093
UniParc:UPI0002218370	EnsemblPlantsGene:Zm00001d052325	EnsemblPlants:Zm00001d052325_P001	EnsemblPlants:Zm00001d052325_T001	InterPro:Znf_HIT	SEG:seg

Description

SWR1 complex subunit 6

Coordinates

chr4:-:187128002..187130399

Molecular Weight (calculated)

19094.6 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.630

Length

173 amino acids

Sequence
(BLAST)

001: MDGDEENVGP FRRTSARTRR MATRMASALA SSDNRAQAAL ARLEALESDN GGVEVVDLND DEYGSTDEED PVLMQKKQSK IMKRKTRQGK ALEKRAARSL
101: MDVLQEANLE SVPPHVPTYS RAAVGPPSTS SRRHYCSVCG SSATYTCVRC GTRFCSCRCQ VIHNDTRCLK FVA

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.