Factsheet for Bra031327.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra006766.1-P
Bra012351.1-P
Bra024548.1-P
Bra030818.1-P
Bra031327.1-P
Bra032836.1-P
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17142478
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17470967
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17142478
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17470967
AT5G37055.1	Bra002649.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra006766.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra031327.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032836.1-P	Field mustard	mitochondrion	96.92	48.46
Bra002649.1-P	Field mustard	mitochondrion	96.92	36.84
Bra006766.1-P	Field mustard	nucleus	93.85	35.67
AT5G37055.1	Thale cress	mitochondrion	89.23	33.92
KRH30163	Soybean	nucleus	70.77	26.59
KRG98203	Soybean	nucleus	70.77	26.59
VIT_08s0007g08060.t01	Wine grape	mitochondrion	67.69	25.58
PGSC0003DMT400058037	Potato	nucleus	63.08	23.98
Solyc03g033480.2.1	Tomato	nucleus	61.54	23.39
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	60.0	22.54
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	58.46	21.71
EES16500	Sorghum	cytosol, nucleus, plastid	56.92	21.39
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	56.92	21.39
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	64.62	21.0
EES16499	Sorghum	mitochondrion	55.38	20.93
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	55.38	20.81
HORVU5Hr1G047490.2	Barley	plastid	56.92	19.89
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	56.92	19.58
KXG22781	Sorghum	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra031327.1

EnsemblPlants:Bra031327.1-P

EnsemblPlantsGene:Bra031327

UniParc:UPI0002547700

UniProt:M4ERA4

MapMan:12.4.4.3

Description

AT5G37055 (E=2e-027) ATSWC6, SEF | SEF (SERRATED LEAVES AND EARLY FLOWERING)

Coordinates

chrA05:-:15979030..15979311

Molecular Weight (calculated)

7048.1 Da

IEP (calculated)

4.268

GRAVY (calculated)

-0.688

Length

65 amino acids

Sequence
(BLAST)

1: MANRRVSSRT RKVATKMAAA LTSTDNRTQA AIARLEALEN DNGALEVVDL NDDEKASLDE EDDLG

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.