Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033480.2.1 | Tomato | nucleus | 99.42 | 99.42 |
| KRG98203 | Soybean | nucleus | 74.85 | 73.99 |
| KRH30163 | Soybean | nucleus | 73.68 | 72.83 |
| Bra002649.1-P | Field mustard | mitochondrion | 69.59 | 69.59 |
| CDY32983 | Canola | mitochondrion | 69.59 | 69.59 |
| AT5G37055.1 | Thale cress | mitochondrion | 69.59 | 69.59 |
| CDY70943 | Canola | nucleus | 69.59 | 69.59 |
| CDY57389 | Canola | mitochondrion | 69.01 | 69.01 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 69.01 | 68.6 |
| Bra006766.1-P | Field mustard | nucleus | 67.84 | 67.84 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 66.67 | 65.9 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 66.08 | 65.32 |
| EES16499 | Sorghum | mitochondrion | 65.5 | 65.12 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 65.5 | 64.74 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 65.5 | 64.74 |
| CDX99412 | Canola | mitochondrion | 24.56 | 64.62 |
| CDY40293 | Canola | mitochondrion | 23.98 | 63.08 |
| Bra031327.1-P | Field mustard | mitochondrion | 23.98 | 63.08 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 64.33 | 62.86 |
| CDX99372 | Canola | mitochondrion | 23.39 | 61.54 |
| CDX77159 | Canola | mitochondrion | 23.39 | 61.54 |
| HORVU5Hr1G047490.2 | Barley | plastid | 64.91 | 59.68 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 69.01 | 59.0 |
| CDY60020 | Canola | cytosol | 44.44 | 58.02 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 63.74 | 57.67 |
| Bra032836.1-P | Field mustard | mitochondrion | 41.52 | 54.62 |
| KXG22781 | Sorghum | plastid | 29.24 | 52.63 |
Protein Annotations
| EntrezGene:102586227 | MapMan:12.4.4.3 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0046872 | GO:GO:0048638 | InterPro:IPR007529 |
| UniProt:M1C212 | PFAM:PF04438 | EnsemblPlantsGene:PGSC0003DMG400022531 | PGSC:PGSC0003DMG400022531 | EnsemblPlants:PGSC0003DMT400058037 | PFscan:PS51083 |
| PANTHER:PTHR13093 | SUPFAM:SSF144232 | UniParc:UPI000295F18C | RefSeq:XP_006343363.1 | RefSeq:XP_015162349.1 | RefSeq:XP_015162350.1 |
| InterPro:Znf_HIT | SEG:seg | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022531]
Coordinates
chr3:+:3490272..3492775
Molecular Weight (calculated)
19199.0 Da
IEP (calculated)
8.693
GRAVY (calculated)
-0.549
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEMSNSAR RMSMRTRKIA PKMAAALASS DNRTQAMLAR LDALESDNAV VEPQLLDDDD EASLDDEDQV FHKKYPKGTK RKTRQAKALE NKRAPKSFLE
101: LLNEANLESL PPHVPTYLRA AVGPPSSIAR RHFCTVCGFS STYTCVQCGM RFCSIKCRTI HNDTRCLKFV A
101: LLNEANLESL PPHVPTYLRA AVGPPSSIAR RHFCTVCGFS STYTCVQCGM RFCSIKCRTI HNDTRCLKFV A
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.