Factsheet for PGSC0003DMT400065423

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002745
PGSC0003DMT400049686
PGSC0003DMT400051893
PGSC0003DMT400058037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	PGSC0003DMT400002745	AT1G52740.1	17470967
AT2G36740.1	PGSC0003DMT400049686	AT3G54560.1	17470967
AT2G36740.1	PGSC0003DMT400051893	AT3G54560.1	17470967
AT2G36740.1	PGSC0003DMT400058037	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009830.2.1	Tomato	nucleus	87.63	92.5
VIT_16s0039g02650.t01	Wine grape	nucleus	56.32	71.1
GSMUA_AchrUn_...	Banana	nucleus	49.21	69.0
KRH58568	Soybean	nucleus	56.58	60.56
AT2G36740.1	Thale cress	nucleus	57.63	60.0
CDX75016	Canola	nucleus	56.84	59.02
CDY33188	Canola	nucleus	56.32	58.79
Os08t0192400-00	Rice	nucleus	53.16	55.96
EES14361	Sorghum	nucleus	52.63	55.56
TraesCS7A01G327700.1	Wheat	nucleus	52.89	54.92
TraesCS7D01G324500.1	Wheat	nucleus	52.11	54.1
Zm00001d035012_P002	Maize	nucleus	51.05	53.01
TraesCS7B01G228400.1	Wheat	nucleus	50.26	52.19
HORVU7Hr1G078440.9	Barley	nucleus	52.63	49.51

Protein Annotations

EntrezGene:102593669	MapMan:12.4.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	UniProt:M1CDY3	PFAM:PF05764
PFAM:PF08265	EnsemblPlantsGene:PGSC0003DMG400025437	PGSC:PGSC0003DMG400025437	EnsemblPlants:PGSC0003DMT400065423	PANTHER:PTHR13275	SMART:SM00993
UniParc:UPI000295DBA3	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	SEG:seg	:	:

Description

Stress responsive gene 6 protein, Srg6 [Source:PGSC_GENE;Acc:PGSC0003DMG400025437]

Coordinates

chr4:+:5435834..5442589

Molecular Weight (calculated)

43219.4 Da

IEP (calculated)

5.472

GRAVY (calculated)

-1.026

Length

380 amino acids

Sequence
(BLAST)

001: METSKEGNVA FLDRTSRATR GKRMTKLLDD EVEEDELFWN QEALKDEEHD IEYEEEGEAV DVFDSDFDED EPEPDEEGEN EPDDRTRTKK RLVYPGRPPA
101: KKKKKMKTLT KTEKAHQENE EAPDPSTPSE HHDAHDDTEA ERTIRKSTRT AVVVKQAERE AIRAALQATT KPIKRKKEGE EKKMTQEEML LEAAQTEVMN
201: LRNLERVLAR EEEVKKKAIV HKAVYNGPQI QYISKNGNCF PSFQTMHVNG ILISAGASYL EFVNGASFGS QISTTSTPYP QKAVCAVTGL PARYRDPKTG
301: LPYATKEAFK IIRERFAEES SRAREEKHMD ELSQAISGLG FTSKRKRSII SNSRKTSYTP RVFARCSKFP ADDSMSEDSE

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.