CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95601
KRG98203
KRH30163
KRH32088
KRH52500
KRH67280
KRH71352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	KRH52500	AT1G52740.1	17470967
AT2G36740.1	KRG95601	AT3G54560.1	17470967
AT2G36740.1	KRH32088	AT3G54560.1	17470967
AT2G36740.1	KRH67280	AT3G54560.1	17470967
AT2G36740.1	KRH71352	AT3G54560.1	17470967
AT2G36740.1	KRG98203	AT5G37055.1	17470967
AT2G36740.1	KRH30163	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02650.t01	Wine grape	nucleus	56.62	66.78
GSMUA_AchrUn_...	Banana	nucleus	50.7	66.42
Solyc04g009830.2.1	Tomato	nucleus	61.41	60.56
CDY33188	Canola	nucleus	61.41	59.89
CDX75016	Canola	nucleus	61.69	59.84
AT2G36740.1	Thale cress	nucleus	60.0	58.36
Os08t0192400-00	Rice	nucleus	58.59	57.62
PGSC0003DMT400065423	Potato	nucleus	60.56	56.58
TraesCS7D01G324500.1	Wheat	nucleus	58.31	56.56
TraesCS7A01G327700.1	Wheat	nucleus	58.03	56.28
EES14361	Sorghum	nucleus	56.34	55.56
TraesCS7B01G228400.1	Wheat	nucleus	56.34	54.64
Zm00001d035012_P002	Maize	nucleus	56.34	54.64
HORVU7Hr1G078440.9	Barley	nucleus	58.03	50.99

Protein Annotations

EntrezGene:100811669	MapMan:12.4.4.2	EMBL:ACUP02003269	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G136000	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0043486
UniProt:I1K3A4	ProteinID:KRH58567.1	EnsemblPlants:KRH58568	ProteinID:KRH58568	ProteinID:KRH58568.1	PFAM:PF05764
PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI00023393D6	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:32832536..32838543

Molecular Weight (calculated)

40981.1 Da

IEP (calculated)

5.085

GRAVY (calculated)

-1.108

Length

355 amino acids

Sequence
(BLAST)

001: MEGSGEDVVL LDRASRATRG KRLTKLLDDE IQEDELFWNQ DALKEDEEDD NYQEEPEIAD EFDSDFDQDE PVPEEEEDPN KNDDDERMHK KKRLIFPGKT
101: LAKKKKKKKT ISKLESSPKE NEDEEHSGKV VEDEGGERMI RKSTRTSVIV RQAERDAIRA ALQATIKPVK RKKEGEEKRM TQEEMLLEAA QTEIMNLRNL
201: ERVLAREEEV KRRAIVHKTV FNGPQIRYIS KNGTSYLEFI KGSSFHSDIP TAPVQYPEQP VCPITGLPAK YRDPKTGQPY ATKEAFKIIR ERFLNESTNS
301: RKDMSMGGLY DSVSGCGFSI KRKRSIMPDK NVNPDGRSLA RFRRIPDFED EDYSD

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.