CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984
KRH38118
KRH58568
KRH71872

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52740.1	KRG91803	AT1G35670.1	19130088
AT1G52740.1	KRH34983	AT1G35670.1	19130088
AT1G52740.1	KRH34984	AT1G35670.1	19130088
AT1G52740.1	KRH58568	AT2G36740.1	17470967
AT1G52740.1	KRH38118	AT3G12810.1	17470967
AT1G52740.1	KRH71872	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63015	Soybean	nucleus	94.85	96.27
KRH54863	Soybean	nucleus	94.85	95.56
KRH16015	Soybean	nucleus	89.71	95.31
KRH05097	Soybean	nucleus	91.91	93.28
AT1G52740.1	Thale cress	nucleus	88.24	89.55
CDY21851	Canola	nucleus	88.24	89.55
Bra018984.1-P	Field mustard	nucleus	86.03	86.67
CDY62197	Canola	nucleus	86.03	86.67
CDY61820	Canola	nucleus	86.03	86.67
CDY47568	Canola	nucleus	86.03	86.67
CDY40131	Canola	nucleus	86.03	86.67
Bra030365.1-P	Field mustard	nucleus	86.03	86.67
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	86.03	86.03
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	86.03	86.03
CDY62164	Canola	nucleus	78.68	85.6
KRH32088	Soybean	nucleus	83.82	83.82
KRH71352	Soybean	mitochondrion	83.82	83.82
KRH27119	Soybean	nucleus	52.21	52.59
CDY21852	Canola	nucleus	79.41	52.43

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100306322	MapMan:12.1.2	EMBL:ACUP02003420	EMBL:BT090369	UniProt:C6SYX1
EnsemblPlantsGene:GLYMA_06G071500	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	EnsemblPlants:KRH52500	ProteinID:KRH52500
ProteinID:KRH52500.1	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF211	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI0001B15A46	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:5464145..5466093

Molecular Weight (calculated)

14422.6 Da

IEP (calculated)

11.052

GRAVY (calculated)

-0.335

Length

136 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI TGKTSASAKD KDKDKKKPVS RSSRAGLQFP VGRIHRLLKS RVSANGRVGA TAAVYSAAIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKSSKE

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.