CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH38118
KRH58568
KRH71872

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	KRH58568	AT2G36740.1	17470967
AT3G54560.1	KRH38118	AT3G12810.1	17470967
AT3G54560.1	KRH71872	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71352	Soybean	mitochondrion	100.0	100.0
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	96.32	96.32
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	96.32	96.32
AT3G54560.1	Thale cress	cytosol	90.44	90.44
TraesCS7D01G246600.1	Wheat	mitochondrion	91.91	89.93
TraesCS1B01G154500.1	Wheat	mitochondrion	91.91	89.93
TraesCS1A01G132400.1	Wheat	mitochondrion	91.91	89.93
Os10t0418000-01	Rice	nucleus	91.91	89.93
Zm00001d033979_P001	Maize	mitochondrion, nucleus	90.44	89.78
Zm00001d013300_P001	Maize	mitochondrion, nucleus	90.44	89.78
GSMUA_Achr8P26920_001	Banana	nucleus	88.24	89.55
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	87.5	89.47
Bra003188.1-P	Field mustard	nucleus	90.44	89.13
CDX67603	Canola	nucleus	90.44	89.13
CDY07535	Canola	nucleus	90.44	89.13
Os03t0743400-01	Rice	nucleus	89.71	89.05
GSMUA_Achr1P04720_001	Banana	nucleus	87.5	88.81
GSMUA_Achr3P15210_001	Banana	nucleus	87.5	88.81
GSMUA_Achr8P04480_001	Banana	nucleus	87.5	88.81
EES07107	Sorghum	mitochondrion	89.71	88.41
Zm00001d027760_P001	Maize	plastid	89.71	88.41
AT2G38810.3	Thale cress	mitochondrion	88.24	88.24
Bra014808.1-P	Field mustard	mitochondrion	88.24	88.24
CDY57201	Canola	nucleus	78.68	87.7
Os03t0162200-01	Rice	nucleus	88.97	87.68
Bra007080.1-P	Field mustard	cytosol	87.5	87.5
CDX78246	Canola	cytosol	87.5	87.5
GSMUA_Achr1P27260_001	Banana	nucleus	86.03	87.31
CDY14429	Canola	plastid	86.03	87.31
CDY07697	Canola	mitochondrion	85.29	86.57
Bra000097.1-P	Field mustard	mitochondrion	85.29	86.57
PGSC0003DMT400049686	Potato	nucleus	88.24	86.33
PGSC0003DMT400051893	Potato	extracellular	86.76	86.13
KRH16015	Soybean	nucleus	80.88	85.94
KRH54863	Soybean	nucleus	83.82	84.44
KRH63015	Soybean	nucleus	83.09	84.33
KRH05097	Soybean	nucleus	83.09	84.33
KRH52500	Soybean	nucleus	83.82	83.82
KXG28801	Sorghum	nucleus	81.62	83.46
KXG40126	Sorghum	nucleus	78.68	80.45
Zm00001d007567_P001	Maize	nucleus	72.06	74.24
CDY13216	Canola	mitochondrion	88.24	64.17
Solyc06g084090.2.1	Tomato	nucleus	86.76	58.13
CDX73471	Canola	plastid	87.5	57.21
TraesCS2D01G571800.1	Wheat	mitochondrion, nucleus, plastid	50.0	56.67
KRH27119	Soybean	nucleus	52.94	53.33
GSMUA_Achr6P23340_001	Banana	mitochondrion	86.03	50.87
Zm00001d007553_P001	Maize	nucleus	70.59	50.53

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100306323	EntrezGene:100782374	MapMan:12.1.2	EMBL:ACUP02000892	EMBL:ACUP02006095
EMBL:BT090370	UniProt:C6SYX2	EnsemblPlantsGene:GLYMA_10G031200	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072	ProteinID:KRH32087.1
EnsemblPlants:KRH32088	ProteinID:KRH32088	ProteinID:KRH32088.1	ProteinID:KRH71352.1	PFAM:PF00125	PFAM:PF16211
PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF211	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000189DA6C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:2714898..2716693

Molecular Weight (calculated)

14582.9 Da

IEP (calculated)

11.115

GRAVY (calculated)

-0.377

Length

136 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAANKD KDKDKKRPIS RSSRAGIQFP VGRIHRQLKQ RVQANGRVGA TAAVYLASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTAKD

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.