Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014808.1-P | Field mustard | mitochondrion | 97.79 | 97.79 |
| CDY57201 | Canola | nucleus | 87.5 | 97.54 |
| Bra003188.1-P | Field mustard | nucleus | 98.53 | 97.1 |
| CDX67603 | Canola | nucleus | 98.53 | 97.1 |
| CDY07535 | Canola | nucleus | 98.53 | 97.1 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.97 | 90.98 |
| PGSC0003DMT400051893 | Potato | extracellular | 91.18 | 90.51 |
| KRH32088 | Soybean | nucleus | 90.44 | 90.44 |
| KRH71352 | Soybean | mitochondrion | 90.44 | 90.44 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 88.97 | 90.3 |
| Os10t0418000-01 | Rice | nucleus | 91.91 | 89.93 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.71 | 89.71 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.71 | 89.71 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 88.24 | 89.55 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 91.18 | 89.21 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 91.18 | 89.21 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 91.18 | 89.21 |
| AT2G38810.3 | Thale cress | mitochondrion | 88.97 | 88.97 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 87.5 | 88.81 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 87.5 | 88.81 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 87.5 | 88.81 |
| Zm00001d027760_P001 | Maize | plastid | 89.71 | 88.41 |
| Os03t0162200-01 | Rice | nucleus | 89.71 | 88.41 |
| EES07107 | Sorghum | mitochondrion | 89.71 | 88.41 |
| PGSC0003DMT400049686 | Potato | nucleus | 88.24 | 86.33 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 86.76 | 86.13 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 86.76 | 86.13 |
| Os03t0743400-01 | Rice | nucleus | 86.03 | 85.4 |
| AT1G52740.1 | Thale cress | nucleus | 83.82 | 85.07 |
| KXG28801 | Sorghum | nucleus | 83.09 | 84.96 |
| KXG40126 | Sorghum | nucleus | 79.41 | 81.2 |
| Zm00001d007567_P001 | Maize | nucleus | 72.79 | 75.0 |
| CDY13216 | Canola | mitochondrion | 97.79 | 71.12 |
| Solyc06g084090.2.1 | Tomato | nucleus | 91.18 | 61.08 |
| AT4G13570.2 | Thale cress | cytoskeleton, cytosol, nucleus | 55.15 | 60.48 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 50.0 | 56.67 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 86.76 | 51.3 |
| Zm00001d007553_P001 | Maize | nucleus | 71.32 | 51.05 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EntrezGene:818463 | EntrezGene:824621 | UniProt:A0A178V944 | ProteinID:AAD25562.1 |
| ProteinID:AEC09586.1 | ProteinID:AEC09587.1 | ProteinID:AEC09588.1 | ProteinID:AEE79250.1 | EMBL:AK220868 | EMBL:AK228050 |
| EMBL:AK228272 | ProteinID:ANM62202.1 | ProteinID:ANM63607.1 | ArrayExpress:AT3G54560 | EnsemblPlantsGene:AT3G54560 | RefSeq:AT3G54560 |
| TAIR:AT3G54560 | RefSeq:AT3G54560-TAIR-G | EnsemblPlants:AT3G54560.1 | TAIR:AT3G54560.1 | EMBL:AY087232 | EMBL:AY088573 |
| EMBL:BT005205 | EMBL:BT026423 | ProteinID:CAB77576.1 | GO:GO:0000003 | GO:GO:0000786 | GO:GO:0000790 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006342 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0016043 | GO:GO:0016048 | GO:GO:0040029 |
| GO:GO:0042742 | GO:GO:0044030 | GO:GO:0045892 | GO:GO:0046982 | Symbol:HTA11 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | RefSeq:NP_001318377.1 | RefSeq:NP_001325682.1 |
| RefSeq:NP_181415.1 | RefSeq:NP_191019.1 | RefSeq:NP_850298.1 | RefSeq:NP_850299.1 | UniProt:O23628 | ProteinID:OAP02208.1 |
| ProteinID:OAP05586.1 | ProteinID:OAP10683.1 | PFAM:PF00125 | PFAM:PF16211 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00620 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 | UniProt:Q0WS87 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000000C57D |
| EMBL:Y12575 | SEG:seg | : | : | : | : |
Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
Coordinates
chr3:+:20196140..20197726
Molecular Weight (calculated)
14541.9 Da
IEP (calculated)
11.052
GRAVY (calculated)
-0.340
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.