Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | CDX75016 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY33188 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY08401 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | CDY52874 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014808.1-P | Field mustard | mitochondrion | 100.0 | 89.71 |
| AT3G54560.1 | Thale cress | cytosol | 97.54 | 87.5 |
| CDX67603 | Canola | nucleus | 97.54 | 86.23 |
| CDY07535 | Canola | nucleus | 97.54 | 86.23 |
| CDX78246 | Canola | cytosol | 94.26 | 84.56 |
| CDY62164 | Canola | nucleus | 83.61 | 81.6 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.52 | 81.2 |
| CDY07697 | Canola | mitochondrion | 88.52 | 80.6 |
| CDY14429 | Canola | plastid | 87.7 | 79.85 |
| PGSC0003DMT400051893 | Potato | extracellular | 88.52 | 78.83 |
| KRH32088 | Soybean | nucleus | 87.7 | 78.68 |
| KRH71352 | Soybean | mitochondrion | 87.7 | 78.68 |
| Os10t0418000-01 | Rice | nucleus | 89.34 | 78.42 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 86.07 | 78.36 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 86.89 | 77.94 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 86.89 | 77.94 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 88.52 | 77.7 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 88.52 | 77.7 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 88.52 | 77.7 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 85.25 | 77.61 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 84.43 | 76.87 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 84.43 | 76.87 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 84.43 | 76.87 |
| Os03t0162200-01 | Rice | nucleus | 86.89 | 76.81 |
| EES07107 | Sorghum | mitochondrion | 86.89 | 76.81 |
| Zm00001d027760_P001 | Maize | plastid | 86.89 | 76.81 |
| CDY21851 | Canola | nucleus | 83.61 | 76.12 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 85.25 | 75.91 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 85.25 | 75.91 |
| CDY62197 | Canola | nucleus | 83.61 | 75.56 |
| CDY61820 | Canola | nucleus | 83.61 | 75.56 |
| CDY47568 | Canola | nucleus | 83.61 | 75.56 |
| CDY40131 | Canola | nucleus | 83.61 | 75.56 |
| PGSC0003DMT400049686 | Potato | nucleus | 86.07 | 75.54 |
| Os03t0743400-01 | Rice | nucleus | 84.43 | 75.18 |
| KXG28801 | Sorghum | nucleus | 81.15 | 74.44 |
| KXG40126 | Sorghum | nucleus | 77.05 | 70.68 |
| CDX99552 | Canola | plastid | 68.85 | 66.67 |
| CDY13216 | Canola | mitochondrion | 100.0 | 65.24 |
| Zm00001d007567_P001 | Maize | nucleus | 70.49 | 65.15 |
| CDX73471 | Canola | plastid | 94.26 | 55.29 |
| Solyc06g084090.2.1 | Tomato | nucleus | 88.52 | 53.2 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 46.72 | 47.5 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 83.61 | 44.35 |
| Zm00001d007553_P001 | Maize | nucleus | 68.85 | 44.21 |
| CDY21852 | Canola | nucleus | 74.59 | 44.17 |
| CDY22659 | Canola | nucleus, plastid | 49.18 | 41.67 |
| CDY23443 | Canola | mitochondrion | 38.52 | 39.17 |
| CDY11491 | Canola | mitochondrion | 24.59 | 34.88 |
| CDY51246 | Canola | plastid | 36.89 | 20.45 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078J1Y1 | UniProt:A0A078J1Y1 | EnsemblPlants:CDY57201 | ProteinID:CDY57201 |
| ProteinID:CDY57201.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00020631001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 |
| SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0004EDCAD1 | : | : | : |
Description
BnaA04g27780DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078J1Y1]
Coordinates
chrLK033554:+:19815..21549
Molecular Weight (calculated)
13202.2 Da
IEP (calculated)
10.947
GRAVY (calculated)
-0.314
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANKDKDKG KMKPISRSAR AGIQFPVGRI HRQLKTRVSA HGRVGATAAV YTASILEYLT AEVLELAGNA SKDLKVKRIT PRHLQLAIRG DEELDTLIKG
101: TIAGGGVIPH IHKSLINKTT NE
101: TIAGGGVIPH IHKSLINKTT NE
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.