Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33188 | Canola | nucleus | 95.9 | 96.43 |
| AT2G36740.1 | Thale cress | nucleus | 81.15 | 81.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.91 | 70.11 |
| VIT_16s0039g02650.t01 | Wine grape | nucleus | 55.74 | 67.77 |
| KRH58568 | Soybean | nucleus | 59.84 | 61.69 |
| Solyc04g009830.2.1 | Tomato | nucleus | 60.11 | 61.11 |
| EES14361 | Sorghum | nucleus | 56.83 | 57.78 |
| Os08t0192400-00 | Rice | nucleus | 56.56 | 57.34 |
| PGSC0003DMT400065423 | Potato | nucleus | 59.02 | 56.84 |
| TraesCS7D01G324500.1 | Wheat | nucleus | 56.28 | 56.28 |
| TraesCS7A01G327700.1 | Wheat | nucleus | 55.46 | 55.46 |
| Zm00001d035012_P002 | Maize | nucleus | 54.64 | 54.64 |
| TraesCS7B01G228400.1 | Wheat | nucleus | 53.83 | 53.83 |
| HORVU7Hr1G078440.9 | Barley | nucleus | 55.19 | 50.0 |
Protein Annotations
| MapMan:12.4.4.2 | GO:A0A078CDB1 | EnsemblPlants:CDX75016 | ProteinID:CDX75016 | ProteinID:CDX75016.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006338 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0043486 | EnsemblPlantsGene:GSBRNA2T00117043001 | PFAM:PF05764 | PFAM:PF08265 | PANTHER:PTHR13275 | SMART:SM00993 |
| UniParc:UPI0004EE8DEA | InterPro:Vps72/YL1 | InterPro:Vps72/YL1_C | SEG:seg | : | : |
Description
BnaA05g07620D
Coordinates
chrLK031802:+:1992017..1994415
Molecular Weight (calculated)
42218.3 Da
IEP (calculated)
4.617
GRAVY (calculated)
-1.059
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDKEEQMV FLDRTSRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DNYEAEAEVA DEFDSDFNDD EPEPEAVAEN EKEERDVPKK RLIYPGKTAP
101: KKNKKKKIVS KLEDAHEDEE MGDKEEEEDE KEPNETQEDM ESEKVIRKST RTSVIVRQAE RDALRAAIQA TTKPIIRKKV GEEKRMTQEE MLLEAAQTEI
201: MNLRNLERVL AREEEVKKKA IVHKDVYKGP QVRFLSKDGC NYLEFCNGAS FSSEISTKSV PYPEKAVCVI TGLPAKYRDP KTGLAYATLD AFKAIRERFM
301: DEYNGLRKKM EMGELFDTLT AANGFSLKRK RTMVPKTSRS FSLRNSARFC NLETPEASED SDSDSD
101: KKNKKKKIVS KLEDAHEDEE MGDKEEEEDE KEPNETQEDM ESEKVIRKST RTSVIVRQAE RDALRAAIQA TTKPIIRKKV GEEKRMTQEE MLLEAAQTEI
201: MNLRNLERVL AREEEVKKKA IVHKDVYKGP QVRFLSKDGC NYLEFCNGAS FSSEISTKSV PYPEKAVCVI TGLPAKYRDP KTGLAYATLD AFKAIRERFM
301: DEYNGLRKKM EMGELFDTLT AANGFSLKRK RTMVPKTSRS FSLRNSARFC NLETPEASED SDSDSD
001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
Arabidopsis Description
SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.