CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07107
EES16499
EES16500
KXG22781
KXG28801
KXG40126

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	EES07107	AT3G54560.1	17470967
AT2G36740.1	KXG28801	AT3G54560.1	17470967
AT2G36740.1	KXG40126	AT3G54560.1	17470967
AT2G36740.1	EES16499	AT5G37055.1	17470967
AT2G36740.1	EES16500	AT5G37055.1	17470967
AT2G36740.1	KXG22781	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035012_P002	Maize	nucleus	90.83	89.34
Os08t0192400-00	Rice	nucleus	81.39	81.16
TraesCS7D01G324500.1	Wheat	nucleus	78.89	77.6
TraesCS7A01G327700.1	Wheat	nucleus	78.61	77.32
TraesCS7B01G228400.1	Wheat	nucleus	75.56	74.32
HORVU7Hr1G078440.9	Barley	nucleus	78.33	69.8
GSMUA_AchrUn_...	Banana	nucleus	50.56	67.16
VIT_16s0039g02650.t01	Wine grape	nucleus	54.44	65.12
CDY33188	Canola	nucleus	57.78	57.14
CDX75016	Canola	nucleus	57.78	56.83
Solyc04g009830.2.1	Tomato	nucleus	56.67	56.67
KRH58568	Soybean	nucleus	55.56	56.34
AT2G36740.1	Thale cress	nucleus	56.39	55.62
PGSC0003DMT400065423	Potato	nucleus	55.56	52.63

Protein Annotations

MapMan:12.4.4.2	EntrezGene:8064331	UniProt:C5YLF7	ncoils:Coil	EnsemblPlants:EES14361	ProteinID:EES14361
ProteinID:EES14361.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0043486	PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993
EnsemblPlantsGene:SORBI_3007G004000	UniParc:UPI0001A8788A	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	RefSeq:XP_002444866.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:380106..383268

Molecular Weight (calculated)

41348.6 Da

IEP (calculated)

4.846

GRAVY (calculated)

-1.060

Length

360 amino acids

Sequence
(BLAST)

001: MDAGDDEPPV LLDRAARATR GKRITKLLED EVEQDEAFWN QEALKDEEND DNYVEEQDAG DEFDSDFGED ESEPDDEPER EERERLPIKK RLMFPGKTLR
101: KTNVKKKKVT PKPEDDAKAD KSADKPSSST QADVPDELEV EKTIRKSTRT SVIVRQAERE AIRAEKEATA KPIKRKKEGE EKRMTQEEML LEAAETEIMN
201: MRNLERVLAR EEEVKKKAVI HKDTYEGPTV RFFSRDGESR LEFINGATFG SELSITSSPY PEKPVCVVTG LPAKYRDPKT GLPYATMEAF KIIRERFLKE
301: EADRKRPNML NMGELFESIT GEHLMPKKRR VEIRSPNISG GSRHGGRFWR IPALDMVDED

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.