Factsheet for HORVU7Hr1G078440.9

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G047490.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	HORVU5Hr1G047490.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G327700.1	Wheat	nucleus	86.63	95.63
TraesCS7D01G324500.1	Wheat	nucleus	86.63	95.63
TraesCS7B01G228400.1	Wheat	nucleus	83.42	92.08
Os08t0192400-00	Rice	nucleus	71.78	80.33
EES14361	Sorghum	nucleus	69.8	78.33
Zm00001d035012_P002	Maize	nucleus	67.08	74.04
GSMUA_AchrUn_...	Banana	nucleus	45.3	67.53
VIT_16s0039g02650.t01	Wine grape	nucleus	46.53	62.46
KRH58568	Soybean	nucleus	50.99	58.03
Solyc04g009830.2.1	Tomato	nucleus	50.74	56.94
CDY33188	Canola	nucleus	50.49	56.04
CDX75016	Canola	nucleus	50.0	55.19
AT2G36740.1	Thale cress	nucleus	49.75	55.07
PGSC0003DMT400065423	Potato	nucleus	49.51	52.63

Protein Annotations

MapMan:12.4.4.2	UniProt:A0A287X055	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	EnsemblPlantsGene:HORVU7Hr1G078440	EnsemblPlants:HORVU7Hr1G078440.9
PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI000B47E421	InterPro:Vps72/YL1
InterPro:Vps72/YL1_C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:460735478..460738652

Molecular Weight (calculated)

45992.2 Da

IEP (calculated)

5.533

GRAVY (calculated)

-1.040

Length

404 amino acids

Sequence
(BLAST)

001: PSLVRSSPLV ASPPFPQNPP TRRRETDGTH RHLAAGEVAM ADHAADEQEP PVLLERAARA TRGKRITKLV EEEVENDEAF WGQDALKEDE EDDNYQEEQD
101: AGDVFDSDFD EDEPQPDDDP EKEVSERLPI KKRLVFPGKT MKKMKAKKKK KKNKFIKLED DDIDDKAPDK TTSSKQSDVP DEWESEKTIR KSTRTAVIVR
201: QAEREAIRAE KQATAKPIKK RKEGEEKRMT QEEMLLEAAE TEIMNMRNLE RVLAREEEVK KKAVVQKAVY EGPTLRFHSR DGESRLEFIN GASFGSELCT
301: TSTPYPEKSV CVVTGLPAKY RDPKTGLPYA TMAAFKIIRE SFLKEEPDKK RPNMSNMGEL FESVAGEHST PKKKRIEGRS PISVDLRHGG RFRRIPALDV
401: MDED

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.