Factsheet for GSMUA_AchrUn_randomP11560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P04720_001
GSMUA_Achr1P27260_001
GSMUA_Achr3P15210_001
GSMUA_Achr6P23340_001
GSMUA_Achr8P04480_001
GSMUA_Achr8P26920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	GSMUA_Achr10P...	AT1G52740.1	17470967
AT2G36740.1	GSMUA_Achr1P04720_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_Achr1P27260_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_Achr3P15210_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_Achr6P23340_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_Achr8P04480_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_Achr8P26920_001	AT3G54560.1	17470967
AT2G36740.1	GSMUA_AchrUn_...	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02650.t01	Wine grape	nucleus	72.32	65.12
Os08t0192400-00	Rice	nucleus	70.11	52.63
Solyc04g009830.2.1	Tomato	nucleus	69.74	52.5
CDY33188	Canola	nucleus	70.48	52.47
CDX75016	Canola	nucleus	70.11	51.91
AT2G36740.1	Thale cress	nucleus	69.37	51.51
KRH58568	Soybean	nucleus	66.42	50.7
EES14361	Sorghum	nucleus	67.16	50.56
TraesCS7D01G324500.1	Wheat	nucleus	67.16	49.73
TraesCS7A01G327700.1	Wheat	nucleus	66.79	49.45
PGSC0003DMT400065423	Potato	nucleus	69.0	49.21
Zm00001d035012_P002	Maize	nucleus	66.42	49.18
TraesCS7B01G228400.1	Wheat	nucleus	64.94	48.09
HORVU7Hr1G078440.9	Barley	nucleus	67.53	45.3

Protein Annotations

MapMan:12.4.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	EnsemblPlantsGene:GSMUA_AchrUn_randomG11560_001	EnsemblPlants:GSMUA_AchrUn_randomP11560_001	EnsemblPlants:GSMUA_AchrUn_randomT11560_001
UniProt:M0U8B5	PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI000296FC98
InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	SEG:seg	:	:	:

Description

Putative Vacuolar protein sorting-associated protein 72 homolog [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11560_001]

Coordinates

chrchrUn_random:+:56230573..56240908

Molecular Weight (calculated)

31237.9 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.955

Length

271 amino acids

Sequence
(BLAST)

001: MSKLLDNAIE QDEIFWNQDA LKEEENDENY EEEVEAADEF DSDFNDDEPD PDEEAEVVAE DKLPVKKRLI FPGKPATKKK NKKKVLLKLE NTPEDEKLSK
101: KTPPSENQDL PDDIEGERTV RKSTRTSVIV RQAEREIRAA LQASMKPIKR KKEGEEKRMT QEEMLLEAAQ TEIMNLRNLE RVLAREEEVK KKAVVHKAVY
201: DGPQIRFTSR NGESYLEFIK GASFQSEICT SSVPYPRKSF CVITGLPAKY RDPKTGLPYA TLEAFKLIRE R

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.