Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 1
- nucleus 2
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P26510_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | GSMUA_AchrUn_... | AT2G36740.1 | 17470967 |
| AT3G54560.1 | GSMUA_Achr3P26510_001 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P27260_001 | Banana | nucleus | 56.96 | 97.76 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 56.96 | 97.76 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 55.65 | 95.52 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 55.65 | 95.52 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 55.65 | 95.52 |
| Os03t0162200-01 | Rice | nucleus | 54.35 | 90.58 |
| Os03t0743400-01 | Rice | nucleus | 53.91 | 90.51 |
| PGSC0003DMT400051893 | Potato | extracellular | 53.91 | 90.51 |
| PGSC0003DMT400049686 | Potato | nucleus | 54.35 | 89.93 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 54.35 | 89.93 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 54.35 | 89.93 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 54.35 | 89.93 |
| EES07107 | Sorghum | mitochondrion | 53.91 | 89.86 |
| Zm00001d027760_P001 | Maize | plastid | 53.91 | 89.86 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 53.48 | 89.78 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 53.48 | 89.78 |
| Os10t0418000-01 | Rice | nucleus | 53.91 | 89.21 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 50.87 | 87.97 |
| AT2G38810.3 | Thale cress | mitochondrion | 51.74 | 87.5 |
| AT3G54560.1 | Thale cress | cytosol | 51.3 | 86.76 |
| Bra000097.1-P | Field mustard | mitochondrion | 50.43 | 86.57 |
| CDY07697 | Canola | mitochondrion | 50.43 | 86.57 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 50.87 | 86.03 |
| KRH32088 | Soybean | nucleus | 50.87 | 86.03 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 50.87 | 86.03 |
| KRH71352 | Soybean | mitochondrion | 50.87 | 86.03 |
| CDY14429 | Canola | plastid | 49.57 | 85.07 |
| CDY07535 | Canola | nucleus | 50.87 | 84.78 |
| Bra003188.1-P | Field mustard | nucleus | 50.87 | 84.78 |
| CDX67603 | Canola | nucleus | 50.87 | 84.78 |
| CDX78246 | Canola | cytosol | 50.0 | 84.56 |
| Bra014808.1-P | Field mustard | mitochondrion | 50.0 | 84.56 |
| Bra007080.1-P | Field mustard | cytosol | 50.0 | 84.56 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 84.56 |
| KXG28801 | Sorghum | nucleus | 48.7 | 84.21 |
| CDY57201 | Canola | nucleus | 44.35 | 83.61 |
| KXG40126 | Sorghum | nucleus | 46.96 | 81.2 |
| Zm00001d007567_P001 | Maize | nucleus | 41.74 | 72.73 |
| CDY13216 | Canola | mitochondrion | 52.61 | 64.71 |
| Solyc06g084090.2.1 | Tomato | nucleus | 56.52 | 64.04 |
| CDX73471 | Canola | plastid | 53.48 | 59.13 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 29.13 | 55.83 |
| Zm00001d007553_P001 | Maize | nucleus | 42.61 | 51.58 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 20.87 | 45.28 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr6G23340_001 | EnsemblPlants:GSMUA_Achr6P23340_001 | EnsemblPlants:GSMUA_Achr6T23340_001 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | UniProt:M0T9I2 | PFAM:PF00125 |
| PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 |
| UniParc:UPI0002959CEA | SEG:seg | : | : | : | : |
Description
Probable histone H2A variant 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23340_001]
Coordinates
chr6:+:23500551..23508914
Molecular Weight (calculated)
25064.5 Da
IEP (calculated)
11.019
GRAVY (calculated)
-0.351
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLLNNNQI KIMSHIHGIW TKVEVTLGTN AKFEISVCRP KVIIFDSPTE TKTISRPFVL INPSNPAVSF PFPFRASSPS DPSKDLEEPG RNQRREMAGK
101: GGKGLLAAKT TAANKDKDKK KPVSRSSRSG LQFPVGRIHR LLKSRISANG RVGATAAVYS AAILEYLTAE VLELAGNASK DLKVKRITPR HLQLAIRGDE
201: ELDTLIKGTI AGGGVIPHIH KSLINKSTKE
101: GGKGLLAAKT TAANKDKDKK KPVSRSSRSG LQFPVGRIHR LLKSRISANG RVGATAAVYS AAILEYLTAE VLELAGNASK DLKVKRITPR HLQLAIRGDE
201: ELDTLIKGTI AGGGVIPHIH KSLINKSTKE
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.