Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- endoplasmic reticulum 1
- mitochondrion 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | EES14361 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | OQU85588 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027760_P001 | Maize | plastid | 100.0 | 100.0 |
| Os03t0162200-01 | Rice | nucleus | 97.83 | 97.83 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 90.58 | 93.28 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 89.86 | 92.54 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 89.86 | 92.54 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 89.13 | 91.79 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 89.13 | 91.79 |
| PGSC0003DMT400049686 | Potato | nucleus | 92.03 | 91.37 |
| PGSC0003DMT400051893 | Potato | extracellular | 90.58 | 91.24 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 86.96 | 90.23 |
| AT3G54560.1 | Thale cress | cytosol | 88.41 | 89.71 |
| KRH71352 | Soybean | mitochondrion | 88.41 | 89.71 |
| KRH32088 | Soybean | nucleus | 88.41 | 89.71 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 87.68 | 88.97 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 87.68 | 88.97 |
| CDX67603 | Canola | nucleus | 88.41 | 88.41 |
| CDY07535 | Canola | nucleus | 88.41 | 88.41 |
| Bra003188.1-P | Field mustard | nucleus | 88.41 | 88.41 |
| Bra014808.1-P | Field mustard | mitochondrion | 86.23 | 87.5 |
| KXG40126 | Sorghum | nucleus | 84.06 | 87.22 |
| CDY57201 | Canola | nucleus | 76.81 | 86.89 |
| AT2G38810.3 | Thale cress | mitochondrion | 85.51 | 86.76 |
| Bra007080.1-P | Field mustard | cytosol | 85.51 | 86.76 |
| CDX78246 | Canola | cytosol | 85.51 | 86.76 |
| CDY14429 | Canola | plastid | 84.06 | 86.57 |
| CDY07697 | Canola | mitochondrion | 84.06 | 86.57 |
| Bra000097.1-P | Field mustard | mitochondrion | 84.06 | 86.57 |
| KXG28801 | Sorghum | nucleus | 81.88 | 84.96 |
| EES08219 | Sorghum | cytosol | 51.45 | 66.36 |
| CDY13216 | Canola | mitochondrion | 86.23 | 63.64 |
| Solyc06g084090.2.1 | Tomato | nucleus | 90.58 | 61.58 |
| CDX73471 | Canola | plastid | 85.51 | 56.73 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 89.86 | 53.91 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EntrezGene:8070617 | UniProt:C5XX54 | EnsemblPlants:EES07107 | ProteinID:EES07107 |
| ProteinID:EES07107.1 | GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0040029 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 |
| PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | EnsemblPlantsGene:SORBI_3004G205300 |
| SUPFAM:SSF47113 | unigene:Sbi.8721 | UniParc:UPI00017B7A03 | RefSeq:XP_002454131.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:55658056..55659229
Molecular Weight (calculated)
14598.8 Da
IEP (calculated)
11.115
GRAVY (calculated)
-0.342
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AAKTTAAKST DKDKDRKKAP VSRSSRAGLQ FPVGRIHRQL KSRASAHGRV GATAAVYSAA ILEYLTAEVL ELAGNASKDL KVKRITPRHL
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTAKE
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTAKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.