Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07107 | Sorghum | mitochondrion | 66.36 | 51.45 |
| KXG40126 | Sorghum | nucleus | 61.68 | 49.62 |
| VIT_09s0002g05770.t01 | Wine grape | endoplasmic reticulum, extracellular | 58.88 | 49.61 |
| KXG28801 | Sorghum | nucleus | 59.81 | 48.12 |
| CDX99552 | Canola | plastid | 54.21 | 46.03 |
| AT4G13570.2 | Thale cress | cytoskeleton, cytosol, nucleus | 50.47 | 43.55 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 61.68 | 38.6 |
| Zm00001d025335_P001 | Maize | cytosol | 48.6 | 36.36 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 46.73 | 22.52 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:C5Y7L4 | EnsemblPlants:EES08219 | ProteinID:EES08219 | ProteinID:EES08219.2 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF76 |
| SMART:SM00414 | EnsemblPlantsGene:SORBI_3005G082900 | SUPFAM:SSF47113 | TMHMM:TMhelix | UniParc:UPI00081AE1DE | : |
Description
hypothetical protein
Coordinates
chr5:-:11060419..11060793
Molecular Weight (calculated)
11990.5 Da
IEP (calculated)
9.547
GRAVY (calculated)
-0.243
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPCWADVDF SMGRIHHQLK SRASMHAYVS ASAIIYTAAI LEYLTAKVLE MASNARKDLK AKSFTPWHLH LANRKNEELD TLIKGTIASG DVIPHIHKAF
101: SNKTAKE
101: SNKTAKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.