Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | EES14361 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | OQU85588 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P26920_001 | Banana | nucleus | 87.97 | 87.31 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 87.22 | 86.57 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 86.47 | 85.82 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 85.71 | 85.07 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 84.96 | 84.33 |
| Os03t0743400-01 | Rice | nucleus | 86.47 | 83.94 |
| Bra007080.1-P | Field mustard | cytosol | 85.71 | 83.82 |
| CDX78246 | Canola | cytosol | 85.71 | 83.82 |
| AT3G54560.1 | Thale cress | cytosol | 84.96 | 83.09 |
| PGSC0003DMT400051893 | Potato | extracellular | 84.96 | 82.48 |
| EES07107 | Sorghum | mitochondrion | 84.96 | 81.88 |
| KRH71352 | Soybean | mitochondrion | 83.46 | 81.62 |
| KRH32088 | Soybean | nucleus | 83.46 | 81.62 |
| Bra014808.1-P | Field mustard | mitochondrion | 83.46 | 81.62 |
| CDY07697 | Canola | mitochondrion | 81.95 | 81.34 |
| Bra000097.1-P | Field mustard | mitochondrion | 81.95 | 81.34 |
| CDY57201 | Canola | nucleus | 74.44 | 81.15 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 82.71 | 80.88 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 82.71 | 80.88 |
| CDY14429 | Canola | plastid | 81.2 | 80.6 |
| PGSC0003DMT400049686 | Potato | nucleus | 84.21 | 80.58 |
| CDX67603 | Canola | nucleus | 83.46 | 80.43 |
| CDY07535 | Canola | nucleus | 83.46 | 80.43 |
| Bra003188.1-P | Field mustard | nucleus | 83.46 | 80.43 |
| AT2G38810.3 | Thale cress | mitochondrion | 81.95 | 80.15 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 78.95 | 78.95 |
| KXG40126 | Sorghum | nucleus | 77.44 | 77.44 |
| Zm00001d007567_P001 | Maize | nucleus | 73.68 | 74.24 |
| EES08219 | Sorghum | cytosol | 48.12 | 59.81 |
| CDY13216 | Canola | mitochondrion | 83.46 | 59.36 |
| Solyc06g084090.2.1 | Tomato | nucleus | 84.96 | 55.66 |
| CDX73471 | Canola | plastid | 85.71 | 54.81 |
| Zm00001d007553_P001 | Maize | nucleus | 73.68 | 51.58 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 84.21 | 48.7 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1B6PT29 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | EnsemblPlants:KXG28801 | ProteinID:KXG28801 | ProteinID:KXG28801.1 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 |
| SMART:SM00414 | EnsemblPlantsGene:SORBI_3005G168500 | SUPFAM:SSF47113 | UniParc:UPI0003C667E1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:-:64732439..64735889
Molecular Weight (calculated)
14069.4 Da
IEP (calculated)
10.928
GRAVY (calculated)
-0.187
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLI AAKIAAGMDK EKKPPITRSA RAGLQFPVGR IHRQLKERSQ ASGRVGATAA VYAAAILEYL TAEVLELAGN ASKDLKMKRI SPRHLQLAIR
101: GDEELDTLIK GTIAGGGVIP HIHKSLINKG VKE
101: GDEELDTLIK GTIAGGGVIP HIHKSLINKG VKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.