Factsheet for PGSC0003DMT400051893

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065423

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	PGSC0003DMT400065423	AT2G36740.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049686	Potato	nucleus	96.35	94.96
GSMUA_Achr1P04720_001	Banana	nucleus	92.7	94.78
GSMUA_Achr8P26920_001	Banana	nucleus	90.51	92.54
GSMUA_Achr1P27260_001	Banana	nucleus	90.51	92.54
GSMUA_Achr8P04480_001	Banana	nucleus	89.78	91.79
Os03t0162200-01	Rice	nucleus	91.97	91.3
AT3G54560.1	Thale cress	cytosol	90.51	91.18
GSMUA_Achr3P15210_001	Banana	nucleus	89.05	91.04
Zm00001d027760_P001	Maize	plastid	91.24	90.58
EES07107	Sorghum	mitochondrion	91.24	90.58
Zm00001d033979_P001	Maize	mitochondrion, nucleus	90.51	90.51
Zm00001d013300_P001	Maize	mitochondrion, nucleus	90.51	90.51
Os03t0743400-01	Rice	nucleus	89.78	89.78
AT2G38810.3	Thale cress	mitochondrion	89.05	89.71
Bra000097.1-P	Field mustard	mitochondrion	87.59	89.55
CDY07697	Canola	mitochondrion	87.59	89.55
TraesCS7D01G246600.1	Wheat	mitochondrion	90.51	89.21
TraesCS1B01G154500.1	Wheat	mitochondrion	90.51	89.21
TraesCS1A01G132400.1	Wheat	mitochondrion	90.51	89.21
Os10t0418000-01	Rice	nucleus	90.51	89.21
Bra014808.1-P	Field mustard	mitochondrion	88.32	88.97
CDY57201	Canola	nucleus	78.83	88.52
Bra003188.1-P	Field mustard	nucleus	89.05	88.41
CDY07535	Canola	nucleus	89.05	88.41
CDX67603	Canola	nucleus	89.05	88.41
CDY14429	Canola	plastid	86.13	88.06
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	85.4	87.97
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	86.86	87.5
CDX78246	Canola	cytosol	86.86	87.5
Bra007080.1-P	Field mustard	cytosol	86.86	87.5
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	86.86	87.5
KRH32088	Soybean	nucleus	86.13	86.76
KRH71352	Soybean	mitochondrion	86.13	86.76
PGSC0003DMT400002745	Potato	nucleus	85.4	86.67
KXG28801	Sorghum	nucleus	82.48	84.96
KXG40126	Sorghum	nucleus	79.56	81.95
Zm00001d007567_P001	Maize	nucleus	70.8	73.48
Solyc06g084090.2.1	Tomato	nucleus	100.0	67.49
CDY13216	Canola	mitochondrion	88.32	64.71
CDX73471	Canola	plastid	86.86	57.21
TraesCS2D01G571800.1	Wheat	mitochondrion, nucleus, plastid	48.91	55.83
GSMUA_Achr6P23340_001	Banana	mitochondrion	90.51	53.91
Zm00001d007553_P001	Maize	nucleus	69.34	50.0
PGSC0003DMT400089480	Potato	nucleus	47.45	47.79
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	45.26	45.59
PGSC0003DMT400091186	Potato	mitochondrion	44.53	44.85
PGSC0003DMT400087364	Potato	mitochondrion	44.53	44.85
PGSC0003DMT400095704	Potato	mitochondrion	41.61	41.61
PGSC0003DMT400090970	Potato	nucleus	36.5	37.31
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	30.66	35.29
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	32.85	35.16
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	30.66	33.87
PGSC0003DMT400094311	Potato	extracellular	27.74	32.76

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102591023	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:M1BSE4	PFAM:PF00125	PFAM:PF16211
EnsemblPlantsGene:PGSC0003DMG401020138	PGSC:PGSC0003DMG401020138	EnsemblPlants:PGSC0003DMT400051893	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF211	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000294F5DC	RefSeq:XP_006352756.1	RefSeq:XP_006352758.1
RefSeq:XP_015166552.1	SEG:seg	:	:	:	:

Description

Histone H2A variant 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401020138]

Coordinates

chr6:+:58903547..58906004

Molecular Weight (calculated)

14469.7 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.321

Length

137 amino acids

Sequence
(BLAST)

001: MAGKGGKGLV AGKTTAAAAA NKEKDKKKPI SRSSRAGLQF PVGRIHRQLK TRTSAHGRVG ATAAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKTTKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.