Factsheet for Os03t0162200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
extracellular: 24083427
nucleus: 26035336

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0689800-01
Os08t0192400-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Os08t0192400-00	AT2G36740.1	17470967
AT3G54560.1	Os02t0689800-01	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027760_P001	Maize	plastid	97.83	97.83
EES07107	Sorghum	mitochondrion	97.83	97.83
Os03t0743400-01	Rice	nucleus	94.2	94.89
GSMUA_Achr1P04720_001	Banana	nucleus	91.3	94.03
GSMUA_Achr1P27260_001	Banana	nucleus	90.58	93.28
GSMUA_Achr8P26920_001	Banana	nucleus	90.58	93.28
GSMUA_Achr8P04480_001	Banana	nucleus	90.58	93.28
GSMUA_Achr3P15210_001	Banana	nucleus	90.58	93.28
PGSC0003DMT400049686	Potato	nucleus	92.75	92.09
Os10t0418000-01	Rice	nucleus	92.75	92.09
PGSC0003DMT400051893	Potato	extracellular	91.3	91.97
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.96	90.23
AT3G54560.1	Thale cress	cytosol	88.41	89.71
KRH71352	Soybean	mitochondrion	87.68	88.97
KRH32088	Soybean	nucleus	87.68	88.97
Bra003188.1-P	Field mustard	nucleus	88.41	88.41
CDY07535	Canola	nucleus	88.41	88.41
CDX67603	Canola	nucleus	88.41	88.41
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	86.96	88.24
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	86.96	88.24
Bra014808.1-P	Field mustard	mitochondrion	86.23	87.5
AT2G38810.3	Thale cress	mitochondrion	86.23	87.5
KXG40126	Sorghum	nucleus	84.06	87.22
CDY57201	Canola	nucleus	76.81	86.89
CDX78246	Canola	cytosol	85.51	86.76
Bra007080.1-P	Field mustard	cytosol	85.51	86.76
Bra000097.1-P	Field mustard	mitochondrion	84.06	86.57
CDY14429	Canola	plastid	84.06	86.57
CDY07697	Canola	mitochondrion	84.06	86.57
CDY13216	Canola	mitochondrion	86.23	63.64
Solyc06g084090.2.1	Tomato	nucleus	91.3	62.07
CDX73471	Canola	plastid	85.51	56.73
GSMUA_Achr6P23340_001	Banana	mitochondrion	90.58	54.35

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EntrezGene:4331710	ProteinID:AAN06860.1	ProteinID:ABF94121.1	EMBL:AK061605
EMBL:AK121533	ProteinID:BAF10963.1	ProteinID:BAS82426.1	ProteinID:EAZ25680.1	GO:GO:0000786	GO:GO:0000790
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS
InterPro:IPR009072	EnsemblPlantsGene:Os03g0162200	EnsemblPlants:Os03t0162200-01	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620
ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	UniProt:Q8H7Y8	SMART:SM00414	SUPFAM:SSF47113
UniParc:UPI00000AD269	RefSeq:XP_015628946.1	SEG:seg	:	:	:

Description

Similar to Histone H2A. (Os03t0162200-01)

Coordinates

chr3:+:3371375..3372344

Molecular Weight (calculated)

14556.8 Da

IEP (calculated)

11.052

GRAVY (calculated)

-0.338

Length

138 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAAKSA DKDKDKKKAP VSRSSRAGLQ FPVGRIHRQL KSRASAHGRV GATAAVYSAA ILEYLTAEVL ELAGNASKDL KVKRITPRHL
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTSKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.