Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g06370.t01 | |
| VIT_16s0039g02650.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | VIT_16s0039g02650.t01 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | VIT_08s0007g06370.t01 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G54560.1 | Thale cress | cytosol | 90.98 | 88.97 |
| CDY57201 | Canola | nucleus | 81.2 | 88.52 |
| Bra003188.1-P | Field mustard | nucleus | 91.73 | 88.41 |
| CDX67603 | Canola | nucleus | 91.73 | 88.41 |
| CDY07535 | Canola | nucleus | 91.73 | 88.41 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 90.23 | 88.24 |
| Bra014808.1-P | Field mustard | mitochondrion | 90.23 | 88.24 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 90.23 | 88.24 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 88.72 | 88.06 |
| KRH32088 | Soybean | nucleus | 89.47 | 87.5 |
| KRH71352 | Soybean | mitochondrion | 89.47 | 87.5 |
| CDX78246 | Canola | cytosol | 89.47 | 87.5 |
| Bra007080.1-P | Field mustard | cytosol | 89.47 | 87.5 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 87.97 | 87.31 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 87.97 | 87.31 |
| Zm00001d027760_P001 | Maize | plastid | 90.23 | 86.96 |
| Os03t0162200-01 | Rice | nucleus | 90.23 | 86.96 |
| EES07107 | Sorghum | mitochondrion | 90.23 | 86.96 |
| CDY14429 | Canola | plastid | 87.22 | 86.57 |
| Bra000097.1-P | Field mustard | mitochondrion | 87.22 | 86.57 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 87.22 | 86.57 |
| CDY07697 | Canola | mitochondrion | 87.22 | 86.57 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 87.22 | 86.57 |
| Os10t0418000-01 | Rice | nucleus | 90.23 | 86.33 |
| AT2G38810.3 | Thale cress | mitochondrion | 87.97 | 86.03 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 89.47 | 85.61 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 89.47 | 85.61 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 89.47 | 85.61 |
| PGSC0003DMT400049686 | Potato | nucleus | 89.47 | 85.61 |
| Os03t0743400-01 | Rice | nucleus | 87.97 | 85.4 |
| PGSC0003DMT400051893 | Potato | extracellular | 87.97 | 85.4 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 87.22 | 84.67 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 87.22 | 84.67 |
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 83.46 | 82.84 |
| KXG28801 | Sorghum | nucleus | 78.95 | 78.95 |
| KXG40126 | Sorghum | nucleus | 77.44 | 77.44 |
| VIT_09s0002g05770.t01 | Wine grape | endoplasmic reticulum, extracellular | 70.68 | 74.02 |
| Zm00001d007567_P001 | Maize | nucleus | 72.93 | 73.48 |
| CDY13216 | Canola | mitochondrion | 90.23 | 64.17 |
| Solyc06g084090.2.1 | Tomato | nucleus | 87.97 | 57.64 |
| CDX73471 | Canola | plastid | 89.47 | 57.21 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 49.62 | 55.0 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 87.97 | 50.87 |
| Zm00001d007553_P001 | Maize | nucleus | 69.92 | 48.95 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100257988 | wikigene:100257988 | MapMan:12.1.2 | ProteinID:CBI25061 | ProteinID:CBI25061.3 |
| UniProt:D7T3I0 | EMBL:FN595511 | GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0040029 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | EntrezGene:LOC100257988 | wikigene:LOC100257988 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 | SMART:SM00414 |
| SUPFAM:SSF47113 | TIGR:TC53724 | UniParc:UPI00015CA9BF | ArrayExpress:VIT_00s0179g00340 | EnsemblPlantsGene:VIT_00s0179g00340 | EnsemblPlants:VIT_00s0179g00340.t01 |
| unigene:Vvi.16211 | RefSeq:XP_002281266 | RefSeq:XP_002281266.1 | SEG:seg | : | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:D7T3I0]
Coordinates
chrUn:-:7573883..7576291
Molecular Weight (calculated)
14155.4 Da
IEP (calculated)
11.120
GRAVY (calculated)
-0.347
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AGKTTAANKE KDKKKPVSRS SRAGIQFPVG RIHRQLKSRI SAHGRVGATA AVYTASILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SKD
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SKD
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.